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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:32.2 nTPM
HPA Brain:51.0 nTPM
GTEx:32.2 nTPM
FANTOM5:66.0 Scaled Tags Per Million
Pig:10.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 38.9
2565 Male, age 75, midline 45.2
2816 Male, age 47, midline 42.5
2194 Female, age 79, both hemispheres 37.1
2048 Male, age 55, midline 35.8
1981 Female, age 72, midline 34.0
Cervical spinal cord, dorsal horn
nTPM: 30.3
2173 Female, age 72, unknown 40.3
2296 Male, age 66, both hemispheres 39.3
2069 Male, age 47, both hemispheres 28.0
1877 Male, age 55, unknown 27.5
2721 Male, age 90, both hemispheres 25.9
2297 Male, age 75, both hemispheres 20.9
Cervical spinal cord, ventral horn
nTPM: 51.0
2809 Male, age 90, both hemispheres 66.4
2480 Male, age 75, both hemispheres 54.3
2295 Male, age 66, both hemispheres 48.6
2820 Female, age 79, both hemispheres 46.7
2068 Male, age 55, unknown 46.3
2098 Female, age 72, unknown 43.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 32.2
Samples: 159

Max nTPM: 79.1
Min nTPM: 11.6
Std nTPM: 11.4
Median nTPM: 30.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 79.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 71.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 70.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 57.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 55.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 55.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 55.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 54.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 53.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 50.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 48.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 47.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 46.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 46.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 46.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 46.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 45.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 45.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 45.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 45.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 44.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 44.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 43.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 43.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 42.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 42.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 42.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 42.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 41.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 41.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 41.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 41.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 41.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 41.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 40.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 40.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 40.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 40.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 39.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 39.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 38.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 38.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 38.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 38.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 38.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 37.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 37.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 37.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 37.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 37.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 36.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 36.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 35.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 35.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 35.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 34.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 33.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 33.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 33.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 33.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 33.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 32.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 32.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 32.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 32.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 32.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 32.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 31.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 31.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 31.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 31.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 31.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 31.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 30.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 30.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 30.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 30.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 30.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 30.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 30.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 30.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 30.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 30.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 30.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 30.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 30.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 29.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 29.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 29.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 28.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 28.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 28.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 28.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 28.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 28.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 28.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 28.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 28.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 28.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 27.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 27.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 27.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 27.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 27.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 27.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 27.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 27.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 27.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 27.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 26.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 26.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 26.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 26.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 26.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 25.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 25.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 25.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 25.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 25.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 25.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 25.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 24.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 24.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 24.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 24.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 23.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 23.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 23.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 23.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 23.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 22.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 22.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 22.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 21.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 21.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 21.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 20.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 20.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 19.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 18.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 18.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 18.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 18.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 17.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 17.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 17.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 17.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 17.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 17.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 16.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 15.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 14.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 14.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 14.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 14.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 13.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 13.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 12.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 11.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

66.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 66.0
FF:10181-103D1 60 years, female 90.0
FF:10159-103A6 76 years, female 42.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 10.6
Samples: 4

Max nTPM: 13.1
Min nTPM: 8.7
Sample A Female 8.7
Sample B Female 11.0
Sample C Male 13.1
Sample D Male 9.4
Ventral spinal cord
nTPM: 10.5
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.8
Sample A Female 11.4
Sample B Female 10.0
Sample C Male 10.7
Sample D Male 9.8

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