HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:29.5 nTPM
HPA Brain:74.6 nTPM
GTEx:29.5 nTPM
FANTOM5:37.4 Scaled Tags Per Million
Pig:47.9 nTPM
Mouse:79.4 nTPM
Allen mouse:13.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody CAB009111
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 74.6
Sample id Sample description nTPM
Hippocampus
nTPM: 58.4
2148 Female, age 91, left hemisphere 79.8
1898 Male, age 80, left hemisphere 76.7
2621 Female, age 67, right hemisphere 63.4
1855 Male, age 76, left hemisphere 56.4
1911 Female, age 85, right hemisphere 38.8
2529 Female, age 94, left hemisphere 35.3
Dentate gyrus
nTPM: 63.2
2531 Female, age 67, both hemispheres 89.9
1927 Female, age 91, both hemispheres 70.7
2246 Female, age 85, both hemispheres 58.0
2530 Female, age 94, left hemisphere 57.4
2528 Male, age 74, both hemispheres 54.6
2010 Male, age 76, both hemispheres 48.7
Entorhinal gyrus
nTPM: 55.0
2764 Male, age 80, right hemisphere 70.0
2613 Female, age 94, left hemisphere 65.0
2686 Male, age 75, right hemisphere 59.1
1938 Female, age 85, left hemisphere 50.0
1787 Male, age 76, left hemisphere 48.6
2117 Female, age 91, right hemisphere 37.1
Hippocampus, CA1
nTPM: 70.3
2749 Male, age 80, left hemisphere 85.3
2045 Male, age 76, both hemispheres 75.3
2082 Female, age 91, right hemisphere 73.9
2527 Male, age 74, both hemispheres 58.5
1873 Female, age 85, both hemispheres 58.3
Hippocampus, CA2
nTPM: 55.5
1940 Female, age 85, left hemisphere 64.2
2113 Female, age 91, right hemisphere 59.4
1963 Male, age 80, left hemisphere 57.1
1892 Male, age 76, both hemispheres 53.6
2437 Female, age 94, left hemisphere 52.3
2249 Male, age 74, both hemispheres 46.2
Hippocampus, CA3
nTPM: 70.0
2620 Female, age 94, left hemisphere 111.6
2861 Female, age 67, both hemispheres 94.0
2137 Male, age 80, left hemisphere 85.3
2436 Male, age 74, both hemispheres 47.1
1867 Male, age 76, both hemispheres 42.3
1891 Female, age 85, both hemispheres 39.6
Parahippocampal cortex
nTPM: 57.3
2622 Female, age 67, right hemisphere 71.5
2693 Female, age 94, both hemispheres 70.6
1850 Male, age 80, both hemispheres 69.6
2245 Female, age 91, both hemispheres 62.7
2532 Female, age 72, left hemisphere 58.0
1933 Female, age 85, both hemispheres 54.0
2250 Female, age 67, right hemisphere 50.6
1990 Female, age 91, right hemisphere 48.3
2018 Male, age 76, both hemispheres 45.8
2692 Male, age 74, both hemispheres 41.9
Perirhinal gyrus
nTPM: 74.6
1794 Male, age 80, right hemisphere 94.2
2521 Female, age 94, right hemisphere 78.2
1841 Female, age 85, right hemisphere 73.1
1847 Female, age 91, left hemisphere 72.7
2848 Male, age 76, right hemisphere 54.6
Subiculum
nTPM: 42.6
2729 Female, age 91, right hemisphere 55.3
1977 Female, age 85, both hemispheres 50.8
1901 Male, age 80, both hemispheres 48.8
2619 Male, age 74, both hemispheres 39.8
2042 Male, age 76, both hemispheres 33.3
2438 Female, age 94, left hemisphere 27.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 29.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.5
Samples: 255

Max nTPM: 103.4
Min nTPM: 1.7
Std nTPM: 19.7
Median nTPM: 28.1
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 103.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 92.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 87.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 82.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 81.8
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 80.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 80.1
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 75.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 74.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 71.7
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 70.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.4
FF:10169-103B7 60 years, female 45.6
FF:10153-102I9 76 years, female 29.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 47.9
Pig sample Sample description nTPM
Subiculum
nTPM: 26.6
Samples: 4

Max nTPM: 36.0
Min nTPM: 18.2
Sample A Female 36.0
Sample B Female 24.7
Sample C Male 27.3
Sample D Male 18.2
Dorsal hippocampus
nTPM: 47.9
Samples: 4

Max nTPM: 67.5
Min nTPM: 26.6
Sample A Female 55.6
Sample B Female 67.5
Sample C Male 26.6
Sample D Male 41.9
Entorhinal cortex
nTPM: 37.2
Samples: 4

Max nTPM: 43.9
Min nTPM: 32.0
Sample A Female 43.9
Sample B Female 36.7
Sample C Male 36.2
Sample D Male 32.0
Ventral hippocampus
nTPM: 41.9
Samples: 4

Max nTPM: 56.5
Min nTPM: 34.6
Sample A Female 39.4
Sample B Female 34.6
Sample C Male 37.2
Sample D Male 56.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 79.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 51.7
Samples: 4

Max nTPM: 56.5
Min nTPM: 42.1
Sample A Male 56.5
Sample B Male 52.1
Sample C Female 56.1
Sample D Female 42.1
Hippocampal formation
nTPM: 79.4
Samples: 4

Max nTPM: 95.3
Min nTPM: 65.0
Sample A Male 65.0
Sample B Male 86.5
Sample C Female 95.3
Sample D Female 70.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 13.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.8
70431211 Antisense, RP_050614_02_D06, Mouse strain C57BL/6J (56 days, male) 16.2
73930840 Antisense, RP_051214_04_D02, Mouse strain C57BL/6J (56 days, male) 11.4

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