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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
178.1
nTPM
Monaco:
63.9
nTPM
Schmiedel:
146.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
178.1
HPA sample
nTPM
gdT-cell nTPM: 127.4
Samples: 6
Max nTPM: 147.2
Min nTPM: 112.2
P10809_1007
115.0
P10809_1022
132.8
P10809_1041
112.2
P10809_1060
125.9
P10809_1077
131.2
P10809_1098
147.2
MAIT T-cell nTPM: 142.6
Samples: 6
Max nTPM: 174.1
Min nTPM: 89.4
P10809_1006
89.4
P10809_1024
174.1
P10809_1043
147.8
P10809_1062
168.9
P10809_1083
118.1
P10809_1097
157.4
Memory CD4 T-cell nTPM: 151.2
Samples: 6
Max nTPM: 167.7
Min nTPM: 124.3
P10809_1014
124.3
P10809_1026
155.5
P10809_1045
133.2
P10809_1064
160.6
P10809_1086
165.7
P10809_1113
167.7
Memory CD8 T-cell nTPM: 143.4
Samples: 5
Max nTPM: 161.2
Min nTPM: 115.2
P10809_1012
115.2
P10809_1027
139.2
P10809_1046
145.8
P10809_1065
161.2
P10809_1111
155.5
Naive CD4 T-cell nTPM: 139.5
Samples: 6
Max nTPM: 160.1
Min nTPM: 119.4
P10809_1015
119.4
P10809_1030
140.0
P10809_1049
148.5
P10809_1068
160.1
P10809_1085
136.8
P10809_1112
132.0
Naive CD8 T-cell nTPM: 146.3
Samples: 6
Max nTPM: 166.4
Min nTPM: 128.1
P10809_1016
142.8
P10809_1031
151.5
P10809_1050
128.1
P10809_1069
166.4
P10809_1087
152.9
P10809_1110
136.2
T-reg nTPM: 178.2
Samples: 6
Max nTPM: 190.7
Min nTPM: 131.3
P10809_1018
131.3
P10809_1037
188.2
P10809_1056
190.7
P10809_1075
188.8
P10809_1094
184.1
P10809_1106
185.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 42.3
Samples: 4
Max nTPM: 53.0
Min nTPM: 29.6
RHH5202_R3573
36.3
RHH5230_R3602
29.6
RHH5259_R3631
50.4
RHH5288_R3660
53.0
Effector memory CD8 T-cell nTPM: 40.2
Samples: 4
Max nTPM: 45.9
Min nTPM: 26.7
RHH5203_R3574
45.8
RHH5231_R3603
42.2
RHH5260_R3632
45.9
RHH5289_R3661
26.7
MAIT T-cell nTPM: 42.3
Samples: 4
Max nTPM: 51.2
Min nTPM: 28.2
RHH5233_R3605
28.2
RHH5205_R3576
46.0
RHH5262_R3634
43.6
RHH5297_R3663
51.2
Memory CD4 T-cell TFH nTPM: 42.3
Samples: 4
Max nTPM: 55.4
Min nTPM: 32.7
RHH5300_R3666
32.7
RHH5236_R3608
55.4
RHH5265_R3637
46.2
RHH5208_R3579
34.7
Memory CD4 T-cell Th1 nTPM: 56.4
Samples: 4
Max nTPM: 84.1
Min nTPM: 36.9
RHH5210_R3581
36.9
RHH5302_R3668
56.7
RHH5238_R3610
84.1
RHH5267_R3639
48.0
Memory CD4 T-cell Th1/Th17 nTPM: 48.0
Samples: 4
Max nTPM: 54.9
Min nTPM: 41.6
RHH5303_R3669
54.9
RHH5211_R3582
48.0
RHH5239_R3611
41.6
RHH5268_R3640
47.3
Memory CD4 T-cell Th17 nTPM: 38.0
Samples: 4
Max nTPM: 53.7
Min nTPM: 28.4
RHH5304_R3670
53.7
RHH5212_R3583
34.0
RHH5240_R3612
28.4
RHH5269_R3641
36.0
Memory CD4 T-cell Th2 nTPM: 46.6
Samples: 4
Max nTPM: 68.9
Min nTPM: 33.6
RHH5305_R3671
68.9
RHH5213_R3584
41.4
RHH5241_R3613
42.5
RHH5270_R3642
33.6
Naive CD4 T-cell nTPM: 49.8
Samples: 4
Max nTPM: 69.9
Min nTPM: 35.6
RHH5306_R3672
56.5
RHH5214_R3585
69.9
RHH5242_R3614
35.6
RHH5271_R3643
37.3
Naive CD8 T-cell nTPM: 37.6
Samples: 4
Max nTPM: 40.9
Min nTPM: 28.6
RHH5201_R3572
28.6
RHH5229_R3601
40.1
RHH5258_R3630
40.7
RHH5287_R3659
40.9
Non-Vd2 gdTCR nTPM: 41.0
Samples: 4
Max nTPM: 49.8
Min nTPM: 30.1
RHH5235_R3607
30.1
RHH5264_R3636
44.4
RHH5207_R3578
39.8
RHH5299_R3665
49.8
T-reg nTPM: 57.3
Samples: 4
Max nTPM: 71.3
Min nTPM: 47.1
RHH5301_R3667
71.3
RHH5237_R3609
47.1
RHH5266_R3638
58.6
RHH5209_R3580
52.1
Terminal effector memory CD4 T-cell nTPM: 44.8
Samples: 2
Max nTPM: 46.8
Min nTPM: 42.7
RHH5243_R3615
42.7
RHH5272_R3644
46.8
Terminal effector memory CD8 T-cell nTPM: 63.9
Samples: 4
Max nTPM: 117.2
Min nTPM: 30.1
RHH5232_R3604
30.1
RHH5204_R3575
117.2
RHH5261_R3633
44.1
RHH5296_R3662
64.3
Vd2 gdTCR nTPM: 62.6
Samples: 4
Max nTPM: 101.8
Min nTPM: 35.2
RHH5234_R3606
35.2
RHH5206_R3577
101.8
RHH5263_R3635
54.9
RHH5298_R3664
58.3
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
