MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.7 nTPM
HPA Brain:38.2 nTPM
GTEx:10.7 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:34.4 nTPM
Mouse:25.6 nTPM
Allen mouse:13.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.2
2219 Male, age 76, both hemispheres 36.5
2411 Female, age 72, unknown 36.3
1870 Female, age 42, unknown 35.3
1827 Male, age 72, unknown 33.9
1833 Male, age 53, unknown 30.8
2666 Male, age 74, left hemisphere 30.4
2019 Male, age 18, unknown 28.3
1830 Male, age 51, unknown 28.0
2828 Female, age 72, unknown 26.5
2586 Male, age 75, left hemisphere 25.6
Dorsal raphe nucleus
nTPM: 32.9
2047 Male, age 72, unknown 36.9
2298 Female, age 72, unknown 35.7
1828 Male, age 53, unknown 33.3
2750 Male, age 76, both hemispheres 31.9
2016 Female, age 72, unknown 26.9
Inferior colliculus
nTPM: 30.8
2097 Female, age 72, unknown 32.3
1848 Female, age 42, unknown 31.9
2849 Male, age 72, unknown 31.5
1890 Male, age 53, unknown 27.5
Median raphe nucleus
nTPM: 37.1
2220 Male, age 76, midline 37.1
Periaquaductal grey, anterior
nTPM: 32.3
1947 Male, age 18, unknown 35.7
1795 Male, age 51, unknown 31.6
2502 Female, age 75, unknown 29.5
Periaquaductal grey, dorsal
nTPM: 30.1
1840 Male, age 53, unknown 35.1
2850 Male, age 76, both hemispheres 31.1
1831 Male, age 72, unknown 28.8
2464 Female, age 72, unknown 25.3
Periaquaductal grey, lateral
nTPM: 25.0
2053 Male, age 18, unknown 27.7
2272 Male, age 74, both hemispheres 24.2
2140 Male, age 76, both hemispheres 23.3
Pretectal area
nTPM: 33.6
2007 Male, age 72, unknown 42.2
1816 Male, age 51, unknown 41.2
1817 Female, age 42, unknown 39.8
2224 Female, age 72, unknown 38.1
1944 Female, age 72, unknown 37.7
1815 Male, age 53, unknown 36.1
2667 Female, age 75, unknown 31.3
2273 Male, age 74, both hemispheres 29.7
2825 Male, age 18, unknown 29.0
2407 Male, age 75, both hemispheres 23.1
2316 Male, age 76, right hemisphere 21.4
Red nucleus
nTPM: 29.0
1821 Female, age 72, unknown 38.8
2725 Female, age 75, unknown 37.0
2588 Male, age 74, left hemisphere 31.5
2785 Male, age 18, unknown 31.1
2503 Female, age 72, unknown 29.4
1954 Female, age 42, unknown 27.8
1904 Male, age 53, unknown 27.7
2823 Male, age 76, right hemisphere 26.2
2584 Male, age 75, left hemisphere 25.8
1865 Male, age 51, unknown 25.4
2227 Male, age 72, unknown 24.0
2769 Male, age 72, unknown 23.4
Substantia nigra
nTPM: 38.2
1916 Female, age 42, unknown 48.7
2241 Male, age 72, unknown 45.1
1851 Male, age 51, unknown 40.4
2665 Male, age 74, both hemispheres 39.3
1941 Male, age 53, unknown 37.6
2409 Female, age 72, unknown 36.8
2699 Male, age 18, unknown 36.5
1889 Female, age 72, unknown 35.6
2583 Male, age 75, right hemisphere 32.9
2590 Female, age 75, unknown 29.7
Superior colliculus
nTPM: 30.4
1895 Male, age 76, right hemisphere 37.0
2587 Male, age 74, left hemisphere 34.3
2668 Female, age 75, unknown 34.1
1839 Male, age 51, unknown 32.9
1796 Male, age 53, unknown 30.1
2087 Female, age 72, unknown 29.3
2261 Male, age 18, unknown 29.2
1913 Female, age 42, unknown 26.9
2664 Male, age 75, both hemispheres 26.5
1995 Male, age 72, unknown 23.5
Ventral tegmental area
nTPM: 34.1
2410 Female, age 72, unknown 39.1
2218 Male, age 76, both hemispheres 38.6
1915 Female, age 42, unknown 36.8
2223 Female, age 72, unknown 30.4
2021 Male, age 53, unknown 30.3
1942 Male, age 51, unknown 29.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.7
Samples: 139

Max nTPM: 21.5
Min nTPM: 6.3
Std nTPM: 2.5
Median nTPM: 10.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 21.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 18.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 16.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 16.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 16.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 14.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 14.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 14.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 14.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.0
FF:10158-103A5 76 years, female 47.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 39.8
Min nTPM: 25.1
Sample A Female 39.8
Sample B Female 33.0
Sample C Male 39.5
Sample D Male 25.1
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 39.1
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 35.9
Sample C Male 39.1
Sample D Male 33.3
Periaqueductal gray
nTPM: 31.6
Samples: 3

Max nTPM: 36.0
Min nTPM: 28.7
Sample B Female 30.2
Sample C Male 36.0
Sample D Male 28.7
Superior colliculi
nTPM: 31.6
Samples: 4

Max nTPM: 36.4
Min nTPM: 26.5
Sample A Female 32.1
Sample B Female 26.5
Sample C Male 36.4
Sample D Male 31.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 27.3
Min nTPM: 23.4
Sample A Male 23.4
Sample B Male 27.3
Sample C Female 26.3
Sample D Female 25.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.2
248539 Antisense, RP_040604_02_G02, Mouse strain C57BL/6J (56 days, male) 13.2
293466 Antisense, RP_040604_02_G02, Mouse strain C57BL/6J (56 days, male) 6.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org