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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.6
nTPM
Monaco:
32.7
nTPM
Schmiedel:
61.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.6
HPA sample
nTPM
gdT-cell nTPM: 20.3
Samples: 6
Max nTPM: 32.9
Min nTPM: 14.7
P10809_1007
18.1
P10809_1022
21.5
P10809_1041
32.9
P10809_1060
15.6
P10809_1077
14.7
P10809_1098
18.8
MAIT T-cell nTPM: 19.1
Samples: 6
Max nTPM: 23.3
Min nTPM: 17.1
P10809_1006
17.6
P10809_1024
23.3
P10809_1043
19.9
P10809_1062
17.7
P10809_1083
18.7
P10809_1097
17.1
Memory CD4 T-cell nTPM: 19.6
Samples: 6
Max nTPM: 24.6
Min nTPM: 15.2
P10809_1014
15.2
P10809_1026
24.6
P10809_1045
20.3
P10809_1064
20.7
P10809_1086
18.4
P10809_1113
18.4
Memory CD8 T-cell nTPM: 18.2
Samples: 5
Max nTPM: 19.4
Min nTPM: 15.5
P10809_1012
19.1
P10809_1027
19.0
P10809_1046
17.9
P10809_1065
15.5
P10809_1111
19.4
Naive CD4 T-cell nTPM: 17.1
Samples: 6
Max nTPM: 21.0
Min nTPM: 12.4
P10809_1015
12.4
P10809_1030
21.0
P10809_1049
16.4
P10809_1068
18.1
P10809_1085
19.6
P10809_1112
15.2
Naive CD8 T-cell nTPM: 22.2
Samples: 6
Max nTPM: 33.8
Min nTPM: 17.5
P10809_1016
17.5
P10809_1031
33.8
P10809_1050
17.9
P10809_1069
21.5
P10809_1087
23.7
P10809_1110
18.7
T-reg nTPM: 23.6
Samples: 6
Max nTPM: 30.1
Min nTPM: 14.9
P10809_1018
14.9
P10809_1037
15.3
P10809_1056
30.1
P10809_1075
25.3
P10809_1094
27.8
P10809_1106
28.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 24.9
Samples: 4
Max nTPM: 31.7
Min nTPM: 20.3
RHH5202_R3573
31.7
RHH5230_R3602
22.9
RHH5259_R3631
24.7
RHH5288_R3660
20.3
Effector memory CD8 T-cell nTPM: 29.2
Samples: 4
Max nTPM: 45.7
Min nTPM: 20.2
RHH5203_R3574
22.7
RHH5231_R3603
45.7
RHH5260_R3632
28.3
RHH5289_R3661
20.2
MAIT T-cell nTPM: 15.3
Samples: 4
Max nTPM: 23.1
Min nTPM: 9.9
RHH5233_R3605
13.9
RHH5205_R3576
14.1
RHH5262_R3634
23.1
RHH5297_R3663
9.9
Memory CD4 T-cell TFH nTPM: 22.2
Samples: 4
Max nTPM: 30.3
Min nTPM: 16.2
RHH5300_R3666
30.3
RHH5236_R3608
22.2
RHH5265_R3637
16.2
RHH5208_R3579
19.9
Memory CD4 T-cell Th1 nTPM: 19.5
Samples: 4
Max nTPM: 29.0
Min nTPM: 14.8
RHH5210_R3581
18.1
RHH5302_R3668
29.0
RHH5238_R3610
14.8
RHH5267_R3639
16.1
Memory CD4 T-cell Th1/Th17 nTPM: 22.2
Samples: 4
Max nTPM: 32.7
Min nTPM: 13.7
RHH5303_R3669
32.7
RHH5211_R3582
23.1
RHH5239_R3611
13.7
RHH5268_R3640
19.4
Memory CD4 T-cell Th17 nTPM: 17.2
Samples: 4
Max nTPM: 22.6
Min nTPM: 13.5
RHH5304_R3670
22.6
RHH5212_R3583
15.5
RHH5240_R3612
17.0
RHH5269_R3641
13.5
Memory CD4 T-cell Th2 nTPM: 25.3
Samples: 4
Max nTPM: 31.7
Min nTPM: 18.6
RHH5305_R3671
31.7
RHH5213_R3584
18.6
RHH5241_R3613
29.1
RHH5270_R3642
21.8
Naive CD4 T-cell nTPM: 17.0
Samples: 4
Max nTPM: 21.6
Min nTPM: 10.6
RHH5306_R3672
21.6
RHH5214_R3585
18.5
RHH5242_R3614
10.6
RHH5271_R3643
17.4
Naive CD8 T-cell nTPM: 23.1
Samples: 4
Max nTPM: 27.7
Min nTPM: 14.3
RHH5201_R3572
27.7
RHH5229_R3601
23.4
RHH5258_R3630
26.9
RHH5287_R3659
14.3
Non-Vd2 gdTCR nTPM: 23.3
Samples: 4
Max nTPM: 38.7
Min nTPM: 15.9
RHH5235_R3607
21.0
RHH5264_R3636
38.7
RHH5207_R3578
17.5
RHH5299_R3665
15.9
T-reg nTPM: 19.7
Samples: 4
Max nTPM: 24.7
Min nTPM: 13.9
RHH5301_R3667
19.0
RHH5237_R3609
24.7
RHH5266_R3638
13.9
RHH5209_R3580
21.0
Terminal effector memory CD4 T-cell nTPM: 28.4
Samples: 2
Max nTPM: 46.0
Min nTPM: 10.8
RHH5243_R3615
10.8
RHH5272_R3644
46.0
Terminal effector memory CD8 T-cell nTPM: 25.2
Samples: 4
Max nTPM: 33.2
Min nTPM: 18.1
RHH5232_R3604
18.1
RHH5204_R3575
33.2
RHH5261_R3633
25.7
RHH5296_R3662
23.6
Vd2 gdTCR nTPM: 32.7
Samples: 4
Max nTPM: 47.1
Min nTPM: 22.2
RHH5234_R3606
22.2
RHH5206_R3577
47.1
RHH5263_R3635
29.8
RHH5298_R3664
31.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
