HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:16.9 nTPM
HPA Brain:11.3 nTPM
GTEx:16.9 nTPM
FANTOM5:36.4 Scaled Tags Per Million
Pig:47.8 nTPM
Mouse:47.9 nTPM
Allen mouse:7.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008421
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 11.3
Sample id Sample description nTPM
Hippocampus
nTPM: 3.2
1898 Male, age 80, left hemisphere 5.4
1911 Female, age 85, right hemisphere 3.6
2529 Female, age 94, left hemisphere 3.4
2621 Female, age 67, right hemisphere 3.1
2148 Female, age 91, left hemisphere 2.4
1855 Male, age 76, left hemisphere 1.3
Dentate gyrus
nTPM: 3.3
1927 Female, age 91, both hemispheres 3.9
2246 Female, age 85, both hemispheres 3.9
2531 Female, age 67, both hemispheres 3.7
2528 Male, age 74, both hemispheres 3.2
2530 Female, age 94, left hemisphere 3.2
2010 Male, age 76, both hemispheres 1.7
Entorhinal gyrus
nTPM: 6.5
2613 Female, age 94, left hemisphere 9.8
2764 Male, age 80, right hemisphere 9.4
1938 Female, age 85, left hemisphere 6.5
1787 Male, age 76, left hemisphere 5.3
2686 Male, age 75, right hemisphere 4.6
2117 Female, age 91, right hemisphere 3.1
Hippocampus, CA1
nTPM: 5.4
2749 Male, age 80, left hemisphere 14.1
2527 Male, age 74, both hemispheres 4.7
2082 Female, age 91, right hemisphere 4.1
1873 Female, age 85, both hemispheres 2.3
2045 Male, age 76, both hemispheres 1.8
Hippocampus, CA2
nTPM: 4.1
1892 Male, age 76, both hemispheres 5.6
2249 Male, age 74, both hemispheres 5.1
2113 Female, age 91, right hemisphere 3.9
1940 Female, age 85, left hemisphere 3.5
2437 Female, age 94, left hemisphere 3.5
1963 Male, age 80, left hemisphere 3.1
Hippocampus, CA3
nTPM: 7.4
2137 Male, age 80, left hemisphere 21.7
1867 Male, age 76, both hemispheres 7.1
2620 Female, age 94, left hemisphere 6.0
2436 Male, age 74, both hemispheres 3.8
2861 Female, age 67, both hemispheres 3.1
1891 Female, age 85, both hemispheres 3.0
Parahippocampal cortex
nTPM: 6.2
1850 Male, age 80, both hemispheres 13.2
1990 Female, age 91, right hemisphere 8.5
1933 Female, age 85, both hemispheres 6.6
2245 Female, age 91, both hemispheres 6.1
2532 Female, age 72, left hemisphere 5.7
2622 Female, age 67, right hemisphere 5.1
2693 Female, age 94, both hemispheres 5.1
2018 Male, age 76, both hemispheres 4.7
2250 Female, age 67, right hemisphere 4.6
2692 Male, age 74, both hemispheres 2.2
Perirhinal gyrus
nTPM: 11.3
1841 Female, age 85, right hemisphere 13.7
1794 Male, age 80, right hemisphere 13.4
2848 Male, age 76, right hemisphere 10.9
1847 Female, age 91, left hemisphere 9.7
2521 Female, age 94, right hemisphere 8.6
Subiculum
nTPM: 5.3
1901 Male, age 80, both hemispheres 10.5
1977 Female, age 85, both hemispheres 7.0
2042 Male, age 76, both hemispheres 5.7
2438 Female, age 94, left hemisphere 3.5
2619 Male, age 74, both hemispheres 3.1
2729 Female, age 91, right hemisphere 2.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 16.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.9
Samples: 255

Max nTPM: 82.3
Min nTPM: 3.3
Std nTPM: 9.6
Median nTPM: 14.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 82.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 64.0
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 51.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 44.6
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 40.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 39.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 38.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 38.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 38.0
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 36.2
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 36.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 36.4
FF:10169-103B7 60 years, female 42.5
FF:10153-102I9 76 years, female 30.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 47.8
Pig sample Sample description nTPM
Subiculum
nTPM: 38.2
Samples: 4

Max nTPM: 47.6
Min nTPM: 34.1
Sample A Female 47.6
Sample B Female 34.1
Sample C Male 36.2
Sample D Male 34.7
Dorsal hippocampus
nTPM: 29.6
Samples: 4

Max nTPM: 31.0
Min nTPM: 28.2
Sample A Female 30.3
Sample B Female 28.2
Sample C Male 31.0
Sample D Male 28.8
Entorhinal cortex
nTPM: 47.8
Samples: 4

Max nTPM: 51.7
Min nTPM: 43.3
Sample A Female 49.6
Sample B Female 51.7
Sample C Male 46.6
Sample D Male 43.3
Ventral hippocampus
nTPM: 23.8
Samples: 4

Max nTPM: 24.9
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 24.9
Sample C Male 24.3
Sample D Male 24.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 47.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 47.9
Samples: 4

Max nTPM: 54.8
Min nTPM: 41.7
Sample A Male 43.9
Sample B Male 51.3
Sample C Female 41.7
Sample D Female 54.8
Hippocampal formation
nTPM: 24.7
Samples: 4

Max nTPM: 31.0
Min nTPM: 19.2
Sample A Male 31.0
Sample B Male 23.1
Sample C Female 19.2
Sample D Female 25.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 7.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.3
68666810 Antisense, RP_050201_01_A04, Mouse strain C57BL/6J (56 days, male) 7.9
74583119 Antisense, RP_051214_02_F03, Mouse strain C57BL/6J (56 days, male) 6.7

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