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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.3
nTPM
Monaco:
41.2
nTPM
Schmiedel:
44.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.3
HPA sample
nTPM
gdT-cell nTPM: 10.5
Samples: 6
Max nTPM: 14.6
Min nTPM: 5.4
P10809_1007
7.8
P10809_1022
14.6
P10809_1041
11.7
P10809_1060
5.4
P10809_1077
9.1
P10809_1098
14.2
MAIT T-cell nTPM: 12.0
Samples: 6
Max nTPM: 13.9
Min nTPM: 9.7
P10809_1006
10.2
P10809_1024
13.9
P10809_1043
13.2
P10809_1062
9.7
P10809_1083
13.3
P10809_1097
11.4
Memory CD4 T-cell nTPM: 9.8
Samples: 6
Max nTPM: 12.9
Min nTPM: 6.6
P10809_1014
9.2
P10809_1026
6.6
P10809_1045
12.9
P10809_1064
12.0
P10809_1086
7.1
P10809_1113
10.9
Memory CD8 T-cell nTPM: 12.1
Samples: 5
Max nTPM: 15.9
Min nTPM: 9.5
P10809_1012
10.3
P10809_1027
9.5
P10809_1046
15.9
P10809_1065
14.2
P10809_1111
10.4
Naive CD4 T-cell nTPM: 14.4
Samples: 6
Max nTPM: 25.8
Min nTPM: 6.2
P10809_1015
10.6
P10809_1030
14.3
P10809_1049
25.8
P10809_1068
14.2
P10809_1085
6.2
P10809_1112
15.0
Naive CD8 T-cell nTPM: 13.3
Samples: 6
Max nTPM: 19.8
Min nTPM: 5.0
P10809_1016
13.0
P10809_1031
15.7
P10809_1050
16.3
P10809_1069
19.8
P10809_1087
5.0
P10809_1110
10.0
T-reg nTPM: 11.5
Samples: 6
Max nTPM: 22.4
Min nTPM: 7.2
P10809_1018
8.4
P10809_1037
12.3
P10809_1056
7.2
P10809_1075
10.3
P10809_1094
8.5
P10809_1106
22.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 29.2
Samples: 4
Max nTPM: 36.0
Min nTPM: 19.2
RHH5202_R3573
31.8
RHH5230_R3602
36.0
RHH5259_R3631
29.9
RHH5288_R3660
19.2
Effector memory CD8 T-cell nTPM: 41.2
Samples: 4
Max nTPM: 50.9
Min nTPM: 28.9
RHH5203_R3574
43.7
RHH5231_R3603
50.9
RHH5260_R3632
28.9
RHH5289_R3661
41.3
MAIT T-cell nTPM: 24.2
Samples: 4
Max nTPM: 30.6
Min nTPM: 18.4
RHH5233_R3605
25.2
RHH5205_R3576
30.6
RHH5262_R3634
22.4
RHH5297_R3663
18.4
Memory CD4 T-cell TFH nTPM: 27.9
Samples: 4
Max nTPM: 47.3
Min nTPM: 11.2
RHH5300_R3666
29.0
RHH5236_R3608
47.3
RHH5265_R3637
24.2
RHH5208_R3579
11.2
Memory CD4 T-cell Th1 nTPM: 29.4
Samples: 4
Max nTPM: 34.5
Min nTPM: 21.5
RHH5210_R3581
31.2
RHH5302_R3668
21.5
RHH5238_R3610
34.5
RHH5267_R3639
30.3
Memory CD4 T-cell Th1/Th17 nTPM: 33.3
Samples: 4
Max nTPM: 41.7
Min nTPM: 23.3
RHH5303_R3669
28.7
RHH5211_R3582
23.3
RHH5239_R3611
41.7
RHH5268_R3640
39.5
Memory CD4 T-cell Th17 nTPM: 30.2
Samples: 4
Max nTPM: 36.8
Min nTPM: 24.6
RHH5304_R3670
31.1
RHH5212_R3583
28.3
RHH5240_R3612
36.8
RHH5269_R3641
24.6
Memory CD4 T-cell Th2 nTPM: 37.6
Samples: 4
Max nTPM: 42.4
Min nTPM: 33.0
RHH5305_R3671
42.4
RHH5213_R3584
40.1
RHH5241_R3613
33.0
RHH5270_R3642
34.7
Naive CD4 T-cell nTPM: 31.2
Samples: 4
Max nTPM: 43.6
Min nTPM: 20.7
RHH5306_R3672
38.7
RHH5214_R3585
43.6
RHH5242_R3614
21.6
RHH5271_R3643
20.7
Naive CD8 T-cell nTPM: 37.7
Samples: 4
Max nTPM: 55.6
Min nTPM: 19.1
RHH5201_R3572
19.1
RHH5229_R3601
55.6
RHH5258_R3630
42.7
RHH5287_R3659
33.4
Non-Vd2 gdTCR nTPM: 29.0
Samples: 4
Max nTPM: 33.6
Min nTPM: 25.6
RHH5235_R3607
25.6
RHH5264_R3636
30.8
RHH5207_R3578
25.8
RHH5299_R3665
33.6
T-reg nTPM: 37.3
Samples: 4
Max nTPM: 49.6
Min nTPM: 29.9
RHH5301_R3667
29.9
RHH5237_R3609
49.6
RHH5266_R3638
33.8
RHH5209_R3580
35.9
Terminal effector memory CD4 T-cell nTPM: 27.4
Samples: 2
Max nTPM: 29.6
Min nTPM: 25.2
RHH5243_R3615
25.2
RHH5272_R3644
29.6
Terminal effector memory CD8 T-cell nTPM: 30.1
Samples: 4
Max nTPM: 35.7
Min nTPM: 27.4
RHH5232_R3604
35.7
RHH5204_R3575
28.3
RHH5261_R3633
28.9
RHH5296_R3662
27.4
Vd2 gdTCR nTPM: 38.9
Samples: 4
Max nTPM: 56.3
Min nTPM: 25.2
RHH5234_R3606
46.1
RHH5206_R3577
27.9
RHH5263_R3635
56.3
RHH5298_R3664
25.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
