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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
95.1
nTPM
Monaco:
369.2
nTPM
Schmiedel:
246.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.1
HPA sample
nTPM
gdT-cell nTPM: 95.0
Samples: 6
Max nTPM: 119.4
Min nTPM: 66.2
P10809_1007
66.2
P10809_1022
105.3
P10809_1041
119.4
P10809_1060
105.5
P10809_1077
91.7
P10809_1098
82.1
MAIT T-cell nTPM: 89.0
Samples: 6
Max nTPM: 124.0
Min nTPM: 69.8
P10809_1006
70.3
P10809_1024
76.8
P10809_1043
84.3
P10809_1062
124.0
P10809_1083
108.9
P10809_1097
69.8
Memory CD4 T-cell nTPM: 85.9
Samples: 6
Max nTPM: 114.3
Min nTPM: 50.8
P10809_1014
50.8
P10809_1026
114.3
P10809_1045
87.8
P10809_1064
96.9
P10809_1086
95.5
P10809_1113
69.9
Memory CD8 T-cell nTPM: 80.5
Samples: 5
Max nTPM: 95.5
Min nTPM: 50.5
P10809_1012
50.5
P10809_1027
94.4
P10809_1046
95.5
P10809_1065
92.9
P10809_1111
69.2
Naive CD4 T-cell nTPM: 84.8
Samples: 6
Max nTPM: 105.3
Min nTPM: 47.2
P10809_1015
47.2
P10809_1030
103.9
P10809_1049
105.3
P10809_1068
100.2
P10809_1085
83.0
P10809_1112
69.2
Naive CD8 T-cell nTPM: 77.7
Samples: 6
Max nTPM: 111.4
Min nTPM: 54.2
P10809_1016
56.9
P10809_1031
82.0
P10809_1050
86.5
P10809_1069
111.4
P10809_1087
75.0
P10809_1110
54.2
T-reg nTPM: 81.2
Samples: 6
Max nTPM: 150.3
Min nTPM: 50.2
P10809_1018
52.6
P10809_1037
50.2
P10809_1056
150.3
P10809_1075
85.3
P10809_1094
88.8
P10809_1106
59.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
369.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 293.8
Samples: 4
Max nTPM: 326.1
Min nTPM: 252.3
RHH5202_R3573
326.1
RHH5230_R3602
313.4
RHH5259_R3631
252.3
RHH5288_R3660
283.2
Effector memory CD8 T-cell nTPM: 318.2
Samples: 4
Max nTPM: 386.7
Min nTPM: 272.6
RHH5203_R3574
325.9
RHH5231_R3603
272.6
RHH5260_R3632
287.7
RHH5289_R3661
386.7
MAIT T-cell nTPM: 351.6
Samples: 4
Max nTPM: 394.7
Min nTPM: 305.2
RHH5233_R3605
381.4
RHH5205_R3576
394.7
RHH5262_R3634
324.9
RHH5297_R3663
305.2
Memory CD4 T-cell TFH nTPM: 331.6
Samples: 4
Max nTPM: 357.9
Min nTPM: 299.9
RHH5300_R3666
318.3
RHH5236_R3608
357.9
RHH5265_R3637
299.9
RHH5208_R3579
350.4
Memory CD4 T-cell Th1 nTPM: 294.2
Samples: 4
Max nTPM: 332.2
Min nTPM: 262.0
RHH5210_R3581
308.8
RHH5302_R3668
332.2
RHH5238_R3610
273.7
RHH5267_R3639
262.0
Memory CD4 T-cell Th1/Th17 nTPM: 308.9
Samples: 4
Max nTPM: 374.6
Min nTPM: 269.6
RHH5303_R3669
374.6
RHH5211_R3582
319.9
RHH5239_R3611
271.3
RHH5268_R3640
269.6
Memory CD4 T-cell Th17 nTPM: 332.1
Samples: 4
Max nTPM: 372.6
Min nTPM: 293.1
RHH5304_R3670
339.7
RHH5212_R3583
323.0
RHH5240_R3612
372.6
RHH5269_R3641
293.1
Memory CD4 T-cell Th2 nTPM: 312.8
Samples: 4
Max nTPM: 337.0
Min nTPM: 272.4
RHH5305_R3671
323.0
RHH5213_R3584
337.0
RHH5241_R3613
318.8
RHH5270_R3642
272.4
Naive CD4 T-cell nTPM: 313.4
Samples: 4
Max nTPM: 316.4
Min nTPM: 310.1
RHH5306_R3672
311.1
RHH5214_R3585
316.0
RHH5242_R3614
316.4
RHH5271_R3643
310.1
Naive CD8 T-cell nTPM: 236.9
Samples: 4
Max nTPM: 277.0
Min nTPM: 216.3
RHH5201_R3572
277.0
RHH5229_R3601
216.3
RHH5258_R3630
233.4
RHH5287_R3659
220.7
Non-Vd2 gdTCR nTPM: 307.2
Samples: 4
Max nTPM: 348.0
Min nTPM: 279.3
RHH5235_R3607
285.1
RHH5264_R3636
316.5
RHH5207_R3578
348.0
RHH5299_R3665
279.3
T-reg nTPM: 300.1
Samples: 4
Max nTPM: 322.7
Min nTPM: 277.1
RHH5301_R3667
277.1
RHH5237_R3609
300.5
RHH5266_R3638
322.7
RHH5209_R3580
299.9
Terminal effector memory CD4 T-cell nTPM: 340.9
Samples: 2
Max nTPM: 358.2
Min nTPM: 323.6
RHH5243_R3615
323.6
RHH5272_R3644
358.2
Terminal effector memory CD8 T-cell nTPM: 304.9
Samples: 4
Max nTPM: 379.3
Min nTPM: 261.1
RHH5232_R3604
379.3
RHH5204_R3575
276.2
RHH5261_R3633
261.1
RHH5296_R3662
303.1
Vd2 gdTCR nTPM: 369.2
Samples: 4
Max nTPM: 414.4
Min nTPM: 320.8
RHH5234_R3606
384.8
RHH5206_R3577
414.4
RHH5263_R3635
356.7
RHH5298_R3664
320.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
