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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
127.1
nTPM
Monaco:
140.8
nTPM
Schmiedel:
169.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.1
HPA sample
nTPM
gdT-cell nTPM: 80.1
Samples: 6
Max nTPM: 124.9
Min nTPM: 53.2
P10809_1007
53.2
P10809_1022
103.8
P10809_1041
124.9
P10809_1060
67.2
P10809_1077
65.6
P10809_1098
66.1
MAIT T-cell nTPM: 69.0
Samples: 6
Max nTPM: 85.2
Min nTPM: 52.8
P10809_1006
54.1
P10809_1024
78.0
P10809_1043
85.2
P10809_1062
79.7
P10809_1083
64.4
P10809_1097
52.8
Memory CD4 T-cell nTPM: 89.4
Samples: 6
Max nTPM: 116.1
Min nTPM: 61.7
P10809_1014
61.7
P10809_1026
116.1
P10809_1045
103.9
P10809_1064
105.6
P10809_1086
80.7
P10809_1113
68.2
Memory CD8 T-cell nTPM: 71.7
Samples: 5
Max nTPM: 97.1
Min nTPM: 56.5
P10809_1012
62.5
P10809_1027
60.3
P10809_1046
97.1
P10809_1065
82.1
P10809_1111
56.5
Naive CD4 T-cell nTPM: 72.7
Samples: 6
Max nTPM: 92.1
Min nTPM: 48.4
P10809_1015
48.4
P10809_1030
79.9
P10809_1049
92.1
P10809_1068
86.1
P10809_1085
62.4
P10809_1112
67.1
Naive CD8 T-cell nTPM: 65.5
Samples: 6
Max nTPM: 76.6
Min nTPM: 46.1
P10809_1016
46.1
P10809_1031
63.5
P10809_1050
76.6
P10809_1069
74.9
P10809_1087
61.7
P10809_1110
69.9
T-reg nTPM: 127.1
Samples: 6
Max nTPM: 199.7
Min nTPM: 86.2
P10809_1018
86.2
P10809_1037
142.8
P10809_1056
199.7
P10809_1075
91.5
P10809_1094
124.2
P10809_1106
118.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
140.8
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 88.3
Samples: 4
Max nTPM: 114.5
Min nTPM: 68.6
RHH5202_R3573
98.9
RHH5230_R3602
114.5
RHH5259_R3631
71.3
RHH5288_R3660
68.6
Effector memory CD8 T-cell nTPM: 134.9
Samples: 4
Max nTPM: 170.4
Min nTPM: 105.6
RHH5203_R3574
137.5
RHH5231_R3603
170.4
RHH5260_R3632
126.1
RHH5289_R3661
105.6
MAIT T-cell nTPM: 124.5
Samples: 4
Max nTPM: 133.1
Min nTPM: 106.2
RHH5233_R3605
127.0
RHH5205_R3576
131.8
RHH5262_R3634
106.2
RHH5297_R3663
133.1
Memory CD4 T-cell TFH nTPM: 116.1
Samples: 4
Max nTPM: 139.2
Min nTPM: 86.8
RHH5300_R3666
101.5
RHH5236_R3608
136.7
RHH5265_R3637
86.8
RHH5208_R3579
139.2
Memory CD4 T-cell Th1 nTPM: 89.5
Samples: 4
Max nTPM: 96.1
Min nTPM: 78.3
RHH5210_R3581
78.3
RHH5302_R3668
88.2
RHH5238_R3610
95.3
RHH5267_R3639
96.1
Memory CD4 T-cell Th1/Th17 nTPM: 100.1
Samples: 4
Max nTPM: 134.8
Min nTPM: 70.8
RHH5303_R3669
80.1
RHH5211_R3582
134.8
RHH5239_R3611
70.8
RHH5268_R3640
114.5
Memory CD4 T-cell Th17 nTPM: 115.0
Samples: 4
Max nTPM: 155.3
Min nTPM: 74.8
RHH5304_R3670
98.9
RHH5212_R3583
130.8
RHH5240_R3612
155.3
RHH5269_R3641
74.8
Memory CD4 T-cell Th2 nTPM: 140.8
Samples: 4
Max nTPM: 204.5
Min nTPM: 93.6
RHH5305_R3671
93.6
RHH5213_R3584
204.5
RHH5241_R3613
122.7
RHH5270_R3642
142.3
Naive CD4 T-cell nTPM: 98.4
Samples: 4
Max nTPM: 106.8
Min nTPM: 92.2
RHH5306_R3672
99.5
RHH5214_R3585
106.8
RHH5242_R3614
92.2
RHH5271_R3643
95.2
Naive CD8 T-cell nTPM: 79.4
Samples: 4
Max nTPM: 96.3
Min nTPM: 60.5
RHH5201_R3572
67.6
RHH5229_R3601
60.5
RHH5258_R3630
96.3
RHH5287_R3659
93.2
Non-Vd2 gdTCR nTPM: 117.7
Samples: 4
Max nTPM: 133.8
Min nTPM: 103.5
RHH5235_R3607
105.3
RHH5264_R3636
133.8
RHH5207_R3578
128.1
RHH5299_R3665
103.5
T-reg nTPM: 112.7
Samples: 4
Max nTPM: 142.1
Min nTPM: 90.2
RHH5301_R3667
90.2
RHH5237_R3609
142.1
RHH5266_R3638
97.5
RHH5209_R3580
120.9
Terminal effector memory CD4 T-cell nTPM: 98.4
Samples: 2
Max nTPM: 98.6
Min nTPM: 98.1
RHH5243_R3615
98.1
RHH5272_R3644
98.6
Terminal effector memory CD8 T-cell nTPM: 98.5
Samples: 4
Max nTPM: 117.0
Min nTPM: 77.6
RHH5232_R3604
102.3
RHH5204_R3575
96.9
RHH5261_R3633
117.0
RHH5296_R3662
77.6
Vd2 gdTCR nTPM: 107.7
Samples: 4
Max nTPM: 124.7
Min nTPM: 90.5
RHH5234_R3606
124.7
RHH5206_R3577
117.3
RHH5263_R3635
90.5
RHH5298_R3664
98.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
