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RHBDD2
HPA
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  • RHBDD2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RHBDD2
Synonyms NPD007, RHBDL7
Gene descriptioni

Full gene name according to HGNC.

Rhomboid domain containing 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband q11.23
Chromosome location (bp) 75842602 - 75888926
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000005486 (version 109)
Entrez gene 57414
HGNC HGNC:23082
UniProt Q6NTF9 (UniProt - Evidence at protein level)
neXtProt NX_Q6NTF9
GeneCards RHBDD2
Antibodypedia RHBDD2 antibodies


PROTEIN FUNCTION
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a member of the rhomboid family of membrane-bound proteases and is overexpressed in some breast cancers. Members of this family are involved in intramembrane proteolysis. In mouse, the orthologous protein associates with the Golgi body. [provided by RefSeq, Sep 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RHBDD2-201
ENSP00000006777
ENST00000006777
Q6NTF9
[Direct mapping] Rhomboid domain-containing protein 2
Show all
Enzymes
   Peptidases
   Serine-type peptidases
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0000839 [Hrd1p ubiquitin ligase ERAD-L complex]
GO:0004252 [serine-type endopeptidase activity]
GO:0005654 [nucleoplasm]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0030433 [ubiquitin-dependent ERAD pathway]
GO:0030968 [endoplasmic reticulum unfolded protein response]
GO:0048471 [perinuclear region of cytoplasm]
GO:0051787 [misfolded protein binding]
GO:1990381 [ubiquitin-specific protease binding]
Show all
364 aa
39.2 kDa
No 4
RHBDD2-202
ENSP00000314144
ENST00000318622
Q6NTF9
[Direct mapping] Rhomboid domain-containing protein 2
Show all
Enzymes
   Peptidases
   Serine-type peptidases
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000839 [Hrd1p ubiquitin ligase ERAD-L complex]
GO:0004252 [serine-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0016020 [membrane]
GO:0030433 [ubiquitin-dependent ERAD pathway]
GO:0030968 [endoplasmic reticulum unfolded protein response]
GO:0051787 [misfolded protein binding]
GO:1990381 [ubiquitin-specific protease binding]
Show all
223 aa
23.7 kDa
No 1
RHBDD2-203
ENSP00000391232
ENST00000428119
Q6NTF9
[Direct mapping] Rhomboid domain-containing protein 2
Show all
Enzymes
   Peptidases
   Serine-type peptidases
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000839 [Hrd1p ubiquitin ligase ERAD-L complex]
GO:0004252 [serine-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0016020 [membrane]
GO:0030433 [ubiquitin-dependent ERAD pathway]
GO:0030968 [endoplasmic reticulum unfolded protein response]
GO:0051787 [misfolded protein binding]
GO:1990381 [ubiquitin-specific protease binding]
Show all
223 aa
23.7 kDa
No 1

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