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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:14.9 nTPM
HPA Brain:46.4 nTPM
GTEx:14.9 nTPM
FANTOM5:131.1 Scaled Tags Per Million
Pig:33.9 nTPM
Mouse:49.7 nTPM
Allen mouse:14.7 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.4
Sample id Sample description nTPM
Amygdala
nTPM: 43.1
2814 Male, age 76, right hemisphere 47.1
2517 Female, age 94, left hemisphere 46.7
1987 Female, age 91, left hemisphere 43.1
2514 Male, age 75, right hemisphere 42.6
2695 Female, age 67, right hemisphere 36.0
Basal amygdala
nTPM: 45.7
2110 Male, age 80, left hemisphere 50.1
2243 Female, age 91, right hemisphere 49.0
2685 Female, age 94, left hemisphere 48.9
1955 Male, age 76, both hemispheres 44.2
2609 Male, age 75, right hemisphere 41.9
2827 Female, age 67, right hemisphere 40.4
Central amygdala
nTPM: 40.2
2239 Male, age 80, left hemisphere 47.3
1905 Male, age 76, both hemispheres 42.6
2701 Female, age 91, right hemisphere 38.2
2515 Male, age 75, right hemisphere 36.8
2826 Female, age 94, left hemisphere 35.9
Corticomedial amygdala
nTPM: 46.4
2829 Male, age 80, left hemisphere 59.4
2429 Female, age 94, left hemisphere 46.5
2242 Female, age 91, right hemisphere 44.1
2240 Male, age 76, both hemispheres 44.0
2535 Female, age 67, right hemisphere 43.9
2428 Male, age 75, right hemisphere 40.3
Lateral amygdala
nTPM: 42.4
1883 Male, age 76, both hemispheres 50.4
2534 Female, age 94, left hemisphere 44.7
2256 Male, age 80, left hemisphere 41.9
2516 Male, age 75, right hemisphere 40.1
2255 Female, age 91, right hemisphere 39.8
2830 Female, age 67, right hemisphere 37.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 14.9
Samples: 152

Max nTPM: 39.8
Min nTPM: 4.1
Std nTPM: 6.4
Median nTPM: 13.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 39.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 39.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 37.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 34.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 33.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 28.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 26.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 26.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 25.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 24.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 24.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 23.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 23.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 22.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 22.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 22.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 22.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 21.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 21.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 21.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 21.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 21.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 21.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 20.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 20.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 20.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 20.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 19.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 19.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 19.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 19.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 19.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 19.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 19.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 18.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 18.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 18.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 18.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 18.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 18.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 17.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 17.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 17.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 17.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 16.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 16.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 16.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 16.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 16.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 16.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 16.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 16.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 15.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 15.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 15.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 15.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 15.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 15.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 15.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 15.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 15.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 15.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 15.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 15.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 14.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 14.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 14.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 14.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 14.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 14.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 14.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 13.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 13.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 13.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 13.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 13.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 13.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 13.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 13.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 13.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 13.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 13.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 12.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 12.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 12.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 12.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 12.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 12.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 12.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 11.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 11.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 11.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 11.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 11.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 11.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 11.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 11.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 11.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 11.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 11.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 11.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 11.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 11.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 11.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 10.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 10.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 10.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 10.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 10.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 10.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 10.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 10.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 10.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 10.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 10.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 10.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 10.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 10.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 9.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 9.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 9.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 9.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 9.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 9.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 9.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 9.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 9.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 9.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 9.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 9.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 9.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 9.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 9.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 9.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 9.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 8.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 8.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 8.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 8.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 8.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 8.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 8.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 8.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 8.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 8.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 7.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 6.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 6.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 4.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

131.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 131.1
FF:10151-102I7 76 years, female 131.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.9
Pig sample Sample description nTPM
Amygdala
nTPM: 33.9
Samples: 4

Max nTPM: 39.3
Min nTPM: 27.8
Sample A Female 39.3
Sample B Female 27.8
Sample C Male 32.7
Sample D Male 35.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 49.7
Samples: 4

Max nTPM: 52.9
Min nTPM: 46.6
Sample A Male 52.5
Sample B Male 46.8
Sample C Female 46.6
Sample D Female 52.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.7
71234742 Antisense, RP_050505_04_D04, Mouse strain C57BL/6J (56 days, male) 14.7

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