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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.1
nTPM
Monaco:
47.3
nTPM
Schmiedel:
75.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.1
HPA sample
nTPM
gdT-cell nTPM: 2.1
Samples: 6
Max nTPM: 4.0
Min nTPM: 1.5
P10809_1007
1.7
P10809_1022
2.2
P10809_1041
1.8
P10809_1060
1.6
P10809_1077
4.0
P10809_1098
1.5
MAIT T-cell nTPM: 2.9
Samples: 6
Max nTPM: 5.7
Min nTPM: 0.8
P10809_1006
2.9
P10809_1024
5.7
P10809_1043
0.8
P10809_1062
1.8
P10809_1083
2.6
P10809_1097
3.3
Memory CD4 T-cell nTPM: 3.8
Samples: 6
Max nTPM: 4.9
Min nTPM: 3.1
P10809_1014
4.9
P10809_1026
4.4
P10809_1045
4.1
P10809_1064
3.3
P10809_1086
3.1
P10809_1113
3.2
Memory CD8 T-cell nTPM: 2.2
Samples: 5
Max nTPM: 4.0
Min nTPM: 0.9
P10809_1012
4.0
P10809_1027
0.9
P10809_1046
2.7
P10809_1065
2.3
P10809_1111
1.0
Naive CD4 T-cell nTPM: 4.5
Samples: 6
Max nTPM: 6.1
Min nTPM: 3.2
P10809_1015
4.6
P10809_1030
3.2
P10809_1049
3.6
P10809_1068
6.1
P10809_1085
5.7
P10809_1112
3.7
Naive CD8 T-cell nTPM: 3.1
Samples: 6
Max nTPM: 4.7
Min nTPM: 1.9
P10809_1016
4.7
P10809_1031
3.6
P10809_1050
3.0
P10809_1069
2.2
P10809_1087
3.1
P10809_1110
1.9
T-reg nTPM: 5.2
Samples: 6
Max nTPM: 6.4
Min nTPM: 2.5
P10809_1018
5.0
P10809_1037
5.1
P10809_1056
6.2
P10809_1075
2.5
P10809_1094
6.4
P10809_1106
5.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 36.5
Samples: 4
Max nTPM: 39.3
Min nTPM: 33.3
RHH5202_R3573
37.2
RHH5230_R3602
36.1
RHH5259_R3631
39.3
RHH5288_R3660
33.3
Effector memory CD8 T-cell nTPM: 23.8
Samples: 4
Max nTPM: 27.0
Min nTPM: 21.9
RHH5203_R3574
27.0
RHH5231_R3603
22.3
RHH5260_R3632
21.9
RHH5289_R3661
24.0
MAIT T-cell nTPM: 25.7
Samples: 4
Max nTPM: 32.0
Min nTPM: 21.7
RHH5233_R3605
21.7
RHH5205_R3576
24.9
RHH5262_R3634
32.0
RHH5297_R3663
24.3
Memory CD4 T-cell TFH nTPM: 34.5
Samples: 4
Max nTPM: 41.0
Min nTPM: 22.7
RHH5300_R3666
39.0
RHH5236_R3608
22.7
RHH5265_R3637
35.2
RHH5208_R3579
41.0
Memory CD4 T-cell Th1 nTPM: 38.7
Samples: 4
Max nTPM: 45.2
Min nTPM: 31.6
RHH5210_R3581
31.6
RHH5302_R3668
35.6
RHH5238_R3610
42.2
RHH5267_R3639
45.2
Memory CD4 T-cell Th1/Th17 nTPM: 40.9
Samples: 4
Max nTPM: 58.5
Min nTPM: 28.6
RHH5303_R3669
35.7
RHH5211_R3582
28.6
RHH5239_R3611
58.5
RHH5268_R3640
40.6
Memory CD4 T-cell Th17 nTPM: 47.3
Samples: 4
Max nTPM: 58.9
Min nTPM: 34.6
RHH5304_R3670
34.6
RHH5212_R3583
44.0
RHH5240_R3612
51.7
RHH5269_R3641
58.9
Memory CD4 T-cell Th2 nTPM: 44.1
Samples: 4
Max nTPM: 53.1
Min nTPM: 39.6
RHH5305_R3671
39.6
RHH5213_R3584
53.1
RHH5241_R3613
42.0
RHH5270_R3642
41.6
Naive CD4 T-cell nTPM: 35.0
Samples: 4
Max nTPM: 46.2
Min nTPM: 21.3
RHH5306_R3672
36.1
RHH5214_R3585
36.4
RHH5242_R3614
21.3
RHH5271_R3643
46.2
Naive CD8 T-cell nTPM: 45.4
Samples: 4
Max nTPM: 57.7
Min nTPM: 33.1
RHH5201_R3572
57.7
RHH5229_R3601
52.5
RHH5258_R3630
38.3
RHH5287_R3659
33.1
Non-Vd2 gdTCR nTPM: 24.9
Samples: 4
Max nTPM: 33.6
Min nTPM: 20.3
RHH5235_R3607
20.3
RHH5264_R3636
22.4
RHH5207_R3578
33.6
RHH5299_R3665
23.2
T-reg nTPM: 38.0
Samples: 4
Max nTPM: 42.4
Min nTPM: 30.9
RHH5301_R3667
42.4
RHH5237_R3609
30.9
RHH5266_R3638
39.3
RHH5209_R3580
39.4
Terminal effector memory CD4 T-cell nTPM: 39.5
Samples: 2
Max nTPM: 40.5
Min nTPM: 38.4
RHH5243_R3615
40.5
RHH5272_R3644
38.4
Terminal effector memory CD8 T-cell nTPM: 25.7
Samples: 4
Max nTPM: 31.0
Min nTPM: 22.1
RHH5232_R3604
22.1
RHH5204_R3575
31.0
RHH5261_R3633
22.4
RHH5296_R3662
27.2
Vd2 gdTCR nTPM: 19.7
Samples: 4
Max nTPM: 23.8
Min nTPM: 18.2
RHH5234_R3606
18.2
RHH5206_R3577
23.8
RHH5263_R3635
18.2
RHH5298_R3664
18.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
