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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
57.2
nTPM
Monaco:
574.6
nTPM
Schmiedel:
557.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.2
HPA sample
nTPM
gdT-cell nTPM: 57.2
Samples: 6
Max nTPM: 73.6
Min nTPM: 44.7
P10809_1007
73.6
P10809_1022
58.8
P10809_1041
44.7
P10809_1060
53.9
P10809_1077
57.6
P10809_1098
54.6
MAIT T-cell nTPM: 27.9
Samples: 6
Max nTPM: 43.5
Min nTPM: 20.3
P10809_1006
43.5
P10809_1024
21.0
P10809_1043
33.2
P10809_1062
20.3
P10809_1083
23.9
P10809_1097
25.5
Memory CD4 T-cell nTPM: 21.7
Samples: 6
Max nTPM: 28.9
Min nTPM: 13.6
P10809_1014
28.9
P10809_1026
18.7
P10809_1045
21.2
P10809_1064
22.2
P10809_1086
25.6
P10809_1113
13.6
Memory CD8 T-cell nTPM: 43.0
Samples: 5
Max nTPM: 55.6
Min nTPM: 29.5
P10809_1012
55.6
P10809_1027
45.5
P10809_1046
41.6
P10809_1065
42.7
P10809_1111
29.5
Naive CD4 T-cell nTPM: 9.9
Samples: 6
Max nTPM: 14.6
Min nTPM: 4.6
P10809_1015
14.6
P10809_1030
10.2
P10809_1049
9.0
P10809_1068
4.6
P10809_1085
11.9
P10809_1112
9.3
Naive CD8 T-cell nTPM: 30.1
Samples: 6
Max nTPM: 42.8
Min nTPM: 14.5
P10809_1016
22.2
P10809_1031
33.2
P10809_1050
37.8
P10809_1069
30.0
P10809_1087
42.8
P10809_1110
14.5
T-reg nTPM: 15.8
Samples: 6
Max nTPM: 33.4
Min nTPM: 7.2
P10809_1018
33.4
P10809_1037
10.3
P10809_1056
17.2
P10809_1075
15.4
P10809_1094
11.3
P10809_1106
7.2
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
574.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 237.0
Samples: 4
Max nTPM: 270.1
Min nTPM: 206.0
RHH5202_R3573
228.0
RHH5230_R3602
243.8
RHH5259_R3631
270.1
RHH5288_R3660
206.0
Effector memory CD8 T-cell nTPM: 451.2
Samples: 4
Max nTPM: 464.8
Min nTPM: 423.0
RHH5203_R3574
423.0
RHH5231_R3603
463.4
RHH5260_R3632
464.8
RHH5289_R3661
453.4
MAIT T-cell nTPM: 223.9
Samples: 4
Max nTPM: 263.1
Min nTPM: 193.4
RHH5233_R3605
227.5
RHH5205_R3576
263.1
RHH5262_R3634
211.7
RHH5297_R3663
193.4
Memory CD4 T-cell TFH nTPM: 176.2
Samples: 4
Max nTPM: 202.4
Min nTPM: 155.2
RHH5300_R3666
191.7
RHH5236_R3608
155.2
RHH5265_R3637
155.4
RHH5208_R3579
202.4
Memory CD4 T-cell Th1 nTPM: 224.6
Samples: 4
Max nTPM: 322.7
Min nTPM: 154.4
RHH5210_R3581
154.4
RHH5302_R3668
197.3
RHH5238_R3610
322.7
RHH5267_R3639
224.0
Memory CD4 T-cell Th1/Th17 nTPM: 219.3
Samples: 4
Max nTPM: 280.3
Min nTPM: 184.0
RHH5303_R3669
206.1
RHH5211_R3582
206.7
RHH5239_R3611
280.3
RHH5268_R3640
184.0
Memory CD4 T-cell Th17 nTPM: 176.9
Samples: 4
Max nTPM: 236.9
Min nTPM: 140.7
RHH5304_R3670
179.5
RHH5212_R3583
140.7
RHH5240_R3612
236.9
RHH5269_R3641
150.3
Memory CD4 T-cell Th2 nTPM: 150.3
Samples: 4
Max nTPM: 163.0
Min nTPM: 136.0
RHH5305_R3671
140.4
RHH5213_R3584
136.0
RHH5241_R3613
161.8
RHH5270_R3642
163.0
Naive CD4 T-cell nTPM: 119.3
Samples: 4
Max nTPM: 155.3
Min nTPM: 94.4
RHH5306_R3672
108.2
RHH5214_R3585
94.4
RHH5242_R3614
155.3
RHH5271_R3643
119.1
Naive CD8 T-cell nTPM: 121.2
Samples: 4
Max nTPM: 142.7
Min nTPM: 94.5
RHH5201_R3572
137.3
RHH5229_R3601
142.7
RHH5258_R3630
110.1
RHH5287_R3659
94.5
Non-Vd2 gdTCR nTPM: 574.6
Samples: 4
Max nTPM: 687.6
Min nTPM: 443.0
RHH5235_R3607
617.7
RHH5264_R3636
550.2
RHH5207_R3578
687.6
RHH5299_R3665
443.0
T-reg nTPM: 142.5
Samples: 4
Max nTPM: 166.5
Min nTPM: 117.6
RHH5301_R3667
128.6
RHH5237_R3609
166.5
RHH5266_R3638
157.4
RHH5209_R3580
117.6
Terminal effector memory CD4 T-cell nTPM: 527.7
Samples: 2
Max nTPM: 639.7
Min nTPM: 415.6
RHH5243_R3615
639.7
RHH5272_R3644
415.6
Terminal effector memory CD8 T-cell nTPM: 540.0
Samples: 4
Max nTPM: 591.7
Min nTPM: 453.7
RHH5232_R3604
583.0
RHH5204_R3575
453.7
RHH5261_R3633
591.7
RHH5296_R3662
531.6
Vd2 gdTCR nTPM: 343.1
Samples: 4
Max nTPM: 428.0
Min nTPM: 279.8
RHH5234_R3606
305.9
RHH5206_R3577
428.0
RHH5263_R3635
358.7
RHH5298_R3664
279.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
