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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.7
nTPM
Monaco:
90.6
nTPM
Schmiedel:
36.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.7
HPA sample
nTPM
gdT-cell nTPM: 27.3
Samples: 6
Max nTPM: 30.7
Min nTPM: 23.6
P10809_1007
24.1
P10809_1022
29.3
P10809_1041
30.7
P10809_1060
23.6
P10809_1077
28.4
P10809_1098
27.6
MAIT T-cell nTPM: 20.8
Samples: 6
Max nTPM: 26.6
Min nTPM: 16.1
P10809_1006
21.9
P10809_1024
20.2
P10809_1043
16.1
P10809_1062
26.6
P10809_1083
23.0
P10809_1097
17.1
Memory CD4 T-cell nTPM: 24.7
Samples: 6
Max nTPM: 31.6
Min nTPM: 21.9
P10809_1014
23.4
P10809_1026
21.9
P10809_1045
22.4
P10809_1064
24.3
P10809_1086
31.6
P10809_1113
24.5
Memory CD8 T-cell nTPM: 24.7
Samples: 5
Max nTPM: 27.4
Min nTPM: 21.9
P10809_1012
24.9
P10809_1027
25.9
P10809_1046
21.9
P10809_1065
27.4
P10809_1111
23.4
Naive CD4 T-cell nTPM: 23.6
Samples: 6
Max nTPM: 27.3
Min nTPM: 16.9
P10809_1015
24.6
P10809_1030
16.9
P10809_1049
21.3
P10809_1068
24.7
P10809_1085
27.3
P10809_1112
26.6
Naive CD8 T-cell nTPM: 22.1
Samples: 6
Max nTPM: 34.0
Min nTPM: 17.0
P10809_1016
17.7
P10809_1031
18.9
P10809_1050
17.0
P10809_1069
26.0
P10809_1087
34.0
P10809_1110
19.0
T-reg nTPM: 33.7
Samples: 6
Max nTPM: 43.3
Min nTPM: 27.3
P10809_1018
32.0
P10809_1037
35.2
P10809_1056
27.3
P10809_1075
30.0
P10809_1094
34.6
P10809_1106
43.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 57.8
Samples: 4
Max nTPM: 69.0
Min nTPM: 42.1
RHH5202_R3573
69.0
RHH5230_R3602
42.1
RHH5259_R3631
67.1
RHH5288_R3660
53.1
Effector memory CD8 T-cell nTPM: 87.3
Samples: 4
Max nTPM: 96.6
Min nTPM: 76.6
RHH5203_R3574
91.1
RHH5231_R3603
84.9
RHH5260_R3632
76.6
RHH5289_R3661
96.6
MAIT T-cell nTPM: 76.6
Samples: 4
Max nTPM: 97.1
Min nTPM: 58.7
RHH5233_R3605
87.0
RHH5205_R3576
97.1
RHH5262_R3634
63.6
RHH5297_R3663
58.7
Memory CD4 T-cell TFH nTPM: 78.5
Samples: 4
Max nTPM: 96.2
Min nTPM: 64.1
RHH5300_R3666
64.1
RHH5236_R3608
81.6
RHH5265_R3637
72.0
RHH5208_R3579
96.2
Memory CD4 T-cell Th1 nTPM: 62.4
Samples: 4
Max nTPM: 63.8
Min nTPM: 60.1
RHH5210_R3581
62.9
RHH5302_R3668
60.1
RHH5238_R3610
63.8
RHH5267_R3639
62.8
Memory CD4 T-cell Th1/Th17 nTPM: 73.4
Samples: 4
Max nTPM: 88.3
Min nTPM: 55.3
RHH5303_R3669
85.1
RHH5211_R3582
65.0
RHH5239_R3611
88.3
RHH5268_R3640
55.3
Memory CD4 T-cell Th17 nTPM: 67.8
Samples: 4
Max nTPM: 80.3
Min nTPM: 55.0
RHH5304_R3670
80.3
RHH5212_R3583
55.0
RHH5240_R3612
78.2
RHH5269_R3641
57.5
Memory CD4 T-cell Th2 nTPM: 67.6
Samples: 4
Max nTPM: 82.3
Min nTPM: 59.4
RHH5305_R3671
60.2
RHH5213_R3584
82.3
RHH5241_R3613
68.5
RHH5270_R3642
59.4
Naive CD4 T-cell nTPM: 61.6
Samples: 4
Max nTPM: 66.0
Min nTPM: 56.3
RHH5306_R3672
61.4
RHH5214_R3585
62.6
RHH5242_R3614
56.3
RHH5271_R3643
66.0
Naive CD8 T-cell nTPM: 62.0
Samples: 4
Max nTPM: 84.7
Min nTPM: 35.6
RHH5201_R3572
84.7
RHH5229_R3601
72.4
RHH5258_R3630
35.6
RHH5287_R3659
55.1
Non-Vd2 gdTCR nTPM: 85.9
Samples: 4
Max nTPM: 114.0
Min nTPM: 70.6
RHH5235_R3607
70.6
RHH5264_R3636
81.5
RHH5207_R3578
114.0
RHH5299_R3665
77.3
T-reg nTPM: 72.4
Samples: 4
Max nTPM: 87.8
Min nTPM: 63.7
RHH5301_R3667
63.7
RHH5237_R3609
87.8
RHH5266_R3638
63.9
RHH5209_R3580
74.0
Terminal effector memory CD4 T-cell nTPM: 82.3
Samples: 2
Max nTPM: 97.9
Min nTPM: 66.7
RHH5243_R3615
66.7
RHH5272_R3644
97.9
Terminal effector memory CD8 T-cell nTPM: 90.6
Samples: 4
Max nTPM: 103.9
Min nTPM: 83.2
RHH5232_R3604
86.0
RHH5204_R3575
89.2
RHH5261_R3633
83.2
RHH5296_R3662
103.9
Vd2 gdTCR nTPM: 71.6
Samples: 4
Max nTPM: 86.0
Min nTPM: 56.6
RHH5234_R3606
57.9
RHH5206_R3577
86.0
RHH5263_R3635
86.0
RHH5298_R3664
56.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
