MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.2 nTPM
HPA Brain:51.6 nTPM
GTEx:70.2 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:82.5 nTPM
Mouse:13.0 nTPM
Allen mouse:3.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 51.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.7
2586 Male, age 75, left hemisphere 53.7
2411 Female, age 72, unknown 52.2
1827 Male, age 72, unknown 47.9
2019 Male, age 18, unknown 45.6
1870 Female, age 42, unknown 42.3
2828 Female, age 72, unknown 41.1
1833 Male, age 53, unknown 34.5
2219 Male, age 76, both hemispheres 34.0
1830 Male, age 51, unknown 33.2
2666 Male, age 74, left hemisphere 32.5
Dorsal raphe nucleus
nTPM: 45.7
2298 Female, age 72, unknown 57.4
2750 Male, age 76, both hemispheres 48.2
2047 Male, age 72, unknown 45.7
1828 Male, age 53, unknown 41.8
2016 Female, age 72, unknown 35.6
Inferior colliculus
nTPM: 42.0
2097 Female, age 72, unknown 49.9
1848 Female, age 42, unknown 42.3
1890 Male, age 53, unknown 39.4
2849 Male, age 72, unknown 36.4
Median raphe nucleus
nTPM: 47.8
2220 Male, age 76, midline 47.8
Periaquaductal grey, anterior
nTPM: 51.6
1795 Male, age 51, unknown 56.4
2502 Female, age 75, unknown 51.6
1947 Male, age 18, unknown 46.8
Periaquaductal grey, dorsal
nTPM: 36.7
2464 Female, age 72, unknown 40.2
1840 Male, age 53, unknown 37.9
1831 Male, age 72, unknown 36.3
2850 Male, age 76, both hemispheres 32.5
Periaquaductal grey, lateral
nTPM: 39.4
2272 Male, age 74, both hemispheres 49.6
2140 Male, age 76, both hemispheres 35.0
2053 Male, age 18, unknown 33.5
Pretectal area
nTPM: 47.9
2007 Male, age 72, unknown 63.4
1816 Male, age 51, unknown 56.0
1817 Female, age 42, unknown 51.8
1944 Female, age 72, unknown 49.7
2667 Female, age 75, unknown 49.4
2273 Male, age 74, both hemispheres 49.0
2224 Female, age 72, unknown 47.7
1815 Male, age 53, unknown 44.8
2825 Male, age 18, unknown 40.6
2316 Male, age 76, right hemisphere 38.6
2407 Male, age 75, both hemispheres 36.4
Red nucleus
nTPM: 42.8
2503 Female, age 72, unknown 53.8
2785 Male, age 18, unknown 51.7
2227 Male, age 72, unknown 45.0
1821 Female, age 72, unknown 44.3
2725 Female, age 75, unknown 44.1
2769 Male, age 72, unknown 43.8
2584 Male, age 75, left hemisphere 41.0
1904 Male, age 53, unknown 40.5
1954 Female, age 42, unknown 39.9
2588 Male, age 74, left hemisphere 39.8
2823 Male, age 76, right hemisphere 35.6
1865 Male, age 51, unknown 34.4
Substantia nigra
nTPM: 40.0
1916 Female, age 42, unknown 54.3
1941 Male, age 53, unknown 49.3
1851 Male, age 51, unknown 47.4
1889 Female, age 72, unknown 44.5
2583 Male, age 75, right hemisphere 43.1
2699 Male, age 18, unknown 36.2
2590 Female, age 75, unknown 35.4
2665 Male, age 74, both hemispheres 34.8
2241 Male, age 72, unknown 30.3
2409 Female, age 72, unknown 24.3
Superior colliculus
nTPM: 42.2
1796 Male, age 53, unknown 52.4
2261 Male, age 18, unknown 49.3
2087 Female, age 72, unknown 49.2
2664 Male, age 75, both hemispheres 44.2
2668 Female, age 75, unknown 42.4
2587 Male, age 74, left hemisphere 39.7
1839 Male, age 51, unknown 38.8
1995 Male, age 72, unknown 36.0
1913 Female, age 42, unknown 35.4
1895 Male, age 76, right hemisphere 35.0
Ventral tegmental area
nTPM: 43.3
1915 Female, age 42, unknown 48.0
1942 Male, age 51, unknown 44.9
2218 Male, age 76, both hemispheres 44.9
2410 Female, age 72, unknown 42.0
2223 Female, age 72, unknown 40.1
2021 Male, age 53, unknown 39.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 70.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.2
Samples: 183

Max nTPM: 156.2
Min nTPM: 16.4
Std nTPM: 24.4
Median nTPM: 66.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 156.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 148.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 140.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 127.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 122.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 115.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 114.5
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 112.6
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 112.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 110.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 109.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.9
FF:10158-103A5 76 years, female 42.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 82.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 81.2
Samples: 4

Max nTPM: 115.1
Min nTPM: 53.3
Sample A Female 115.1
Sample B Female 74.2
Sample C Male 82.3
Sample D Male 53.3
Midbrain
nTPM: 82.5
Samples: 4

Max nTPM: 87.0
Min nTPM: 73.1
Sample A Female 84.9
Sample B Female 84.8
Sample C Male 87.0
Sample D Male 73.1
Periaqueductal gray
nTPM: 60.7
Samples: 3

Max nTPM: 66.4
Min nTPM: 52.7
Sample B Female 63.0
Sample C Male 66.4
Sample D Male 52.7
Superior colliculi
nTPM: 79.8
Samples: 4

Max nTPM: 99.4
Min nTPM: 67.6
Sample A Female 99.4
Sample B Female 71.8
Sample C Male 80.2
Sample D Male 67.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 19.9
Min nTPM: 8.6
Sample A Male 19.9
Sample B Male 12.9
Sample C Female 8.6
Sample D Female 10.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
68744797 Antisense, RP_050208_01_F08, Mouse strain C57BL/6J (56 days, male) 3.3

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