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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
151.6
Sample id
Sample description
nTPM
Amygdala nTPM: 134.5
2695
Female, age 67, right hemisphere
188.7
1987
Female, age 91, left hemisphere
131.7
2517
Female, age 94, left hemisphere
125.9
2814
Male, age 76, right hemisphere
118.3
2514
Male, age 75, right hemisphere
107.8
Basal amygdala nTPM: 148.2
2609
Male, age 75, right hemisphere
197.7
2243
Female, age 91, right hemisphere
152.2
2110
Male, age 80, left hemisphere
148.0
2685
Female, age 94, left hemisphere
142.2
1955
Male, age 76, both hemispheres
132.0
2827
Female, age 67, right hemisphere
117.0
Central amygdala nTPM: 151.6
2239
Male, age 80, left hemisphere
193.7
2515
Male, age 75, right hemisphere
182.0
1905
Male, age 76, both hemispheres
127.7
2701
Female, age 91, right hemisphere
127.7
2826
Female, age 94, left hemisphere
127.1
Corticomedial amygdala nTPM: 138.9
2829
Male, age 80, left hemisphere
165.7
2428
Male, age 75, right hemisphere
146.6
2429
Female, age 94, left hemisphere
140.5
2535
Female, age 67, right hemisphere
137.4
2242
Female, age 91, right hemisphere
122.5
2240
Male, age 76, both hemispheres
120.9
Lateral amygdala nTPM: 147.8
2516
Male, age 75, right hemisphere
180.9
2255
Female, age 91, right hemisphere
156.4
2256
Male, age 80, left hemisphere
151.0
1883
Male, age 76, both hemispheres
146.1
2830
Female, age 67, right hemisphere
129.4
2534
Female, age 94, left hemisphere
122.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 105.8
Samples: 181
Max nTPM: 218.1
Min nTPM: 40.1
Std nTPM: 32.0
Median nTPM: 101.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
218.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
215.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
213.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
204.6
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
197.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
189.2
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
173.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
167.9
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
167.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
167.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
161.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
155.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
152.3
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
150.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
149.2
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
147.2
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
146.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
145.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
142.2
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
142.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
141.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
141.1
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
140.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
139.6
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
139.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
137.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
137.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
135.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
135.2
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
134.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
134.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
133.3
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
132.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
130.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
129.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
128.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
127.5
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
127.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
125.9
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
125.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
124.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
124.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
123.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
122.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
122.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
122.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
122.1
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
120.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
118.9
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
118.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
117.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
117.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
117.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
117.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
117.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
116.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
116.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
115.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
114.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
114.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
114.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
112.6
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
112.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
111.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
110.9
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
110.6
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
110.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
110.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
109.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
109.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
109.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
108.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
108.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
108.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
107.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
106.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
106.4
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
106.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
105.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
105.9
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
104.8
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
104.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
104.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
104.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
104.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
103.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
103.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
102.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
102.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
101.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
101.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
101.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
100.9
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
100.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
100.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
100.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
100.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
99.7
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
99.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
98.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
97.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
97.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
97.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
96.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
96.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
96.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
95.9
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
95.4
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
94.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
94.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
94.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
94.0
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
93.1
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
93.1
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
92.9
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
92.8
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
92.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
92.1
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
91.5
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
90.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
90.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
90.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
89.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
87.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
87.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
86.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
86.0
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
86.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
85.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
85.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
85.5
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
85.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
84.7
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
84.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
84.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
84.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
83.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
83.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
82.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
82.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
82.6
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
82.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
82.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
81.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
80.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
80.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
79.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
79.3
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
78.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
78.6
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
78.3
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
78.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
77.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
77.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
76.9
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
76.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
75.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
75.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
75.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
75.3
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
73.2
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
72.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
69.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
67.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
67.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
67.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
67.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
66.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
65.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
64.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
64.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
62.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
60.7
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
58.7
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
57.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
56.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
56.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
54.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
49.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
45.4
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
40.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.2
Pig sample
Sample description
nTPM
Amygdala nTPM: 26.2
Samples: 4
Max nTPM: 37.4
Min nTPM: 17.5
Sample A
Female
37.4
Sample B
Female
17.5
Sample C
Male
23.7
Sample D
Male
26.2
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 92.1
Samples: 4
Max nTPM: 107.8
Min nTPM: 86.3
Sample A
Male
86.5
Sample B
Male
87.8
Sample C
Female
107.8
Sample D
Female
86.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
