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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • TAC1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:223.0 nTPM
FANTOM5:78.3 Scaled Tags Per Million
Pig:349.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA014429
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 223.0
Samples: 300

Max nTPM: 1314.7
Min nTPM: 0.7
Std nTPM: 177.4
Median nTPM: 199.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1314.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 764.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 731.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 692.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 687.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 677.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 661.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 645.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 625.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 618.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 603.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 601.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 594.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 543.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 538.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 530.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 530.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 525.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 506.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 504.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 495.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 493.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 485.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 474.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 470.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 462.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 462.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 461.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 461.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 451.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 442.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 441.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 436.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 432.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 426.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 425.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 416.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 413.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 405.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 403.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 396.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 396.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 393.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 391.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 390.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 387.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 381.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 380.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 380.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 379.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 379.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 377.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 376.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 374.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 374.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 368.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 366.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 364.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 362.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 362.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 359.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 358.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 357.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 353.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 349.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 347.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 347.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 346.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 345.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 345.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 342.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 341.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 332.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 332.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 331.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 327.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 327.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 322.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 321.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 311.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 310.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 310.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 309.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 307.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 305.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 305.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 303.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 301.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 299.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 299.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 298.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 298.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 295.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 294.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 288.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 282.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 281.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 277.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 272.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 272.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 270.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 268.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 265.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 264.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 263.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 263.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 259.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 256.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 255.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 254.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 254.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 253.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 253.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 251.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 251.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 251.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 250.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 248.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 248.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 244.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 243.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 243.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 242.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 241.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 238.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 235.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 235.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 234.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 234.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 234.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 232.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 230.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 229.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 228.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 227.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 227.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 226.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 223.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 222.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 222.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 220.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 218.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 210.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 209.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 206.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 204.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 201.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 201.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 200.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 199.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 198.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 196.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 195.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 194.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 192.3
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 192.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 188.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 188.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 187.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 185.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 185.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 183.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 181.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 178.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 177.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 177.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 175.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 173.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 171.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 169.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 166.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 165.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 164.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 164.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 162.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 157.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 156.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 156.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 156.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 155.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 150.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 150.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 149.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 148.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 141.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 140.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 135.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 132.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 131.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 130.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 129.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 127.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 127.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 122.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 119.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 119.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 118.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 116.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 116.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 116.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 113.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 112.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 111.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 111.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 110.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 110.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 109.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 109.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 108.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 106.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 103.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 102.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 96.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 92.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 92.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 91.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 91.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 89.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 88.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 87.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 86.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 85.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 83.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 83.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 77.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 76.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 73.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 71.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 71.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 70.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 68.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 67.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 67.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 65.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 65.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 64.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 63.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 62.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 62.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 60.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 60.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 59.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 55.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 55.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 53.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 51.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 49.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 47.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 42.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 42.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 41.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 40.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 40.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 39.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 39.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 39.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 37.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 37.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 34.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 32.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 32.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 30.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 29.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 29.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 28.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 28.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 24.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 23.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 22.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 22.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 21.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 21.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 20.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 19.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 19.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 19.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 18.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 17.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 16.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 16.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 16.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 14.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 11.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 10.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 10.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 8.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 8.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 8.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 6.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 5.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 5.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 4.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 4.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 3.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 3.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 3.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 2.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 0.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

78.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 78.3
FF:10164-103B2 76 years, female 78.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.3
Pig sample Sample description nTPM
Caudate
nTPM: 349.3
Samples: 4

Max nTPM: 426.6
Min nTPM: 274.3
Sample A Female 274.3
Sample B Female 308.2
Sample C Male 426.6
Sample D Male 388.1

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