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TISSUE HYPOTHALAMUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Hypothalamus
HYPOTHALAMUS - Expression summary
Mouse brain, Intensity
Hypothalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

70.120
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:7.4 nTPM
HPA Brain:21.2 nTPM
GTEx:7.4 nTPM
Pig:28.5 nTPM
Mouse:16.3 nTPM
Allen mouse:0.6 Expression energy

HYPOTHALAMUS - Annotated protein expression
Pending normal tissue analysis

HYPOTHALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA068389
Hypothalamus mean intensity 70.120
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Dorsal tuberomammillary nucleus 51.357
Mammillary nucleus 41.129
Periventricular hypothalamic nucleus 61.944
Supraoptic nucleus 59.669
Tuberal nucleus 45.592
Ventral tuberomammillary nucleus 45.578
Lateral preoptic area 43.604
Medial preoptic area 32.652
Suprachiasmatic nucleus 70.120
Paraventricular hypothalamic nucleus 39.545
Anterior hypothalamic area, central 51.885
Ventral medial hypothalamic nucleus 69.888
Ventral medial hypothalamic nucleus* -
Arcuate nucleus 53.295
Arcuate nucleus* -
Peduncular part of lateral hypothalmus 41.186
Dorsal medial hypothalamic nucleus 58.018
Stria terminalis* -

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.2
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 20.1
2226 Male, age 75, left hemisphere 30.1
1961 Female, age 42, unknown 10.1
Dorsomedial nucleus
nTPM: 16.7
1989 Male, age 62, unknown 30.2
2017 Female, age 42, unknown 10.6
2041 Female, age 72, unknown 9.4
Lateral hypothalamic area
nTPM: 17.9
2228 Male, age 66, unknown 28.6
2271 Male, age 75, both hemispheres 16.1
1791 Male, age 80, right hemisphere 15.3
2412 Male, age 62, unknown 11.4
Mammillary body
nTPM: 21.2
2413 Male, age 66, unknown 46.7
1923 Female, age 72, unknown 21.9
1945 Male, age 80, right hemisphere 17.5
1948 Female, age 72, unknown 10.8
1834 Female, age 42, unknown 9.1
Paraventricular nucleus
nTPM: 14.2
2700 Male, age 62, unknown 14.2
Preoptic area
nTPM: 15.5
1907 Male, age 80, right hemisphere 19.6
1861 Female, age 42, unknown 16.4
2414 Female, age 72, unknown 10.5
Supraoptic nucleus
nTPM: 13.1
1894 Female, age 72, unknown 15.9
2043 Male, age 62, unknown 12.9
2835 Female, age 72, unknown 10.6
Ventromedial nucleus
nTPM: 11.9
1982 Female, age 72, unknown 13.4
1822 Female, age 42, unknown 10.5

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.4
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 7.4
Samples: 202

Max nTPM: 92.8
Min nTPM: 1.6
Std nTPM: 7.8
Median nTPM: 6.2
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 92.8
GTEX-14LLW-0011-R8a-SM-62LFG 70-79 years, female 59.9
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 34.0
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 17.7
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 15.2
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 15.1
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 15.0
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 14.7
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 14.0
GTEX-QDT8-0011-R8A-SM-32PKE 30-39 years, female 13.5
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 13.1
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 12.2
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 12.2
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 11.1
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 10.7
GTEX-R55E-0011-R8A-SM-2TC66 20-29 years, male 10.6
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 10.4
GTEX-NL3H-0011-R8a-SM-DIPDY 60-69 years, male 10.4
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 10.2
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 10.1
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 10.0
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 9.7
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 9.5
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 9.5
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 9.5
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 9.4
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 9.3
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 9.3
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 9.3
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 9.2
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 9.1
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 9.1
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 9.1
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 8.9
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 8.9
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 8.9
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 8.8
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 8.8
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 8.8
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 8.7
GTEX-Q2AG-0011-R8A-SM-2HMK5 40-49 years, female 8.6
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 8.5
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 8.5
GTEX-13IVO-0011-R8a-SM-5L3DY 70-79 years, male 8.4
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 8.4
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 8.4
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 8.3
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 8.3
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 8.2
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 8.0
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 7.9
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 7.9
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 7.8
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 7.7
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 7.7
GTEX-S7SE-0011-R8A-SM-2XCDG 50-59 years, male 7.7
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 7.7
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 7.7
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 7.6
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 7.6
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 7.5
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 7.5
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 7.5
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 7.5
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 7.4
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 7.4
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 7.3
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 7.3
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 7.3
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 7.3
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 7.3
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 7.3
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 7.3
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 7.2
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 7.2
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 7.2
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 7.2
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 7.2
GTEX-N7MT-0011-R8a-SM-2I5GU 60-69 years, female 7.1
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 7.0
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 7.0
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 6.9
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 6.8
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 6.8
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 6.8
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 6.8
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 6.7
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 6.7
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 6.7
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 6.7
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 6.6
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 6.6
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 6.5
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 6.5
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 6.5
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 6.4
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 6.4
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 6.4
GTEX-TSE9-0011-R8A-SM-3DB7R 60-69 years, female 6.3
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 6.3
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 6.3
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 6.1
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 6.1
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 6.1
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 6.0
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 6.0
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 6.0
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 5.9
GTEX-183WM-0011-R8a-SM-7189W 70-79 years, female 5.9
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 5.9
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 5.9
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 5.9
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 5.8
GTEX-13NZ8-0011-R8b-SM-5KM48 60-69 years, female 5.8
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 5.8
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 5.7
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 5.7
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 5.6
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 5.6
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 5.6
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 5.6
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 5.6
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 5.6
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 5.6
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 5.6
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 5.6
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 5.5
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 5.4
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 5.4
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 5.4
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 5.4
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 5.3
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 5.3
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 5.3
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 5.3
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 5.2
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 5.2
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 5.2
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 5.1
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 5.1
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 5.1
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 5.1
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 5.0
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 5.0
GTEX-RU72-0011-R8A-SM-2TF61 50-59 years, female 5.0
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 5.0
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 5.0
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 4.9
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 4.7
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 4.7
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 4.7
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 4.6
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 4.6
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 4.6
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 4.6
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 4.5
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 4.5
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 4.5
GTEX-OHPN-0011-R8A-SM-33HBT 60-69 years, female 4.4
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 4.3
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 4.3
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 4.3
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 4.3
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 4.3
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 4.2
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 4.2
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 4.1
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 4.1
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 4.1
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 4.1
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 4.1
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 4.0
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 4.0
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 3.9
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 3.9
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 3.9
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 3.8
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 3.8
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 3.8
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 3.7
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 3.7
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 3.6
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 3.6
GTEX-NPJ7-0011-R8a-SM-2I3G2 60-69 years, female 3.5
GTEX-X4EP-0011-R8B-SM-4QASL 60-69 years, female 3.5
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 3.5
GTEX-18464-0011-R8a-SM-72D4Z 50-59 years, male 3.4
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 3.4
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 3.3
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 3.3
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 3.3
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 3.2
GTEX-145MI-0011-R8b-SM-5PNZ9 60-69 years, female 3.1
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 3.0
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 2.9
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 2.9
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 2.8
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 2.5
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 2.4
GTEX-XLM4-0011-R8A-SM-4AT44 60-69 years, male 2.3
GTEX-1H3VE-0011-R8b-SM-A9G1L 40-49 years, male 1.8
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 1.6
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.5
Pig sample Sample description nTPM
Hypothalamus
nTPM: 28.5
Samples: 4

Max nTPM: 32.1
Min nTPM: 25.0
Sample A Female 32.1
Sample B Female 25.0
Sample C Male 28.0
Sample D Male 29.0

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.3
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 16.3
Samples: 4

Max nTPM: 17.8
Min nTPM: 13.4
Sample A Male 13.4
Sample B Male 16.4
Sample C Female 17.8
Sample D Female 17.7

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.6
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 0.6
69201600 Antisense, RP_050317_03_C03, Mouse strain C57BL/6J (56 days, male) 1.5
73512203 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 0.2
70919573 Antisense, RP_050713_01_F02, Mouse strain C57BL/6J (56 days, male) 0.1
72119595 Antisense, RP_051017_04_A09, Mouse strain C57BL/6J (56 days, male) 0.1

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