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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:46.7 nTPM
GTEx:46.7 nTPM
FANTOM5:1.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035072
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 46.7
Samples: 156

Max nTPM: 174.6
Min nTPM: 0.0
Std nTPM: 42.5
Median nTPM: 42.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 174.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 173.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 150.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 148.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 130.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 125.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 122.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 122.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 118.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 115.6
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 115.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 114.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 111.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 109.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 106.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 106.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 105.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 103.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 103.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 102.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 100.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 97.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 97.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 96.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 91.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 89.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 88.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 88.6
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 87.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 87.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 87.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 86.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 85.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 85.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 84.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 82.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 81.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 80.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 79.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 79.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 78.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 76.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 74.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 74.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 73.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 73.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 72.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 71.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 69.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 68.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 65.9
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 63.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 62.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 61.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 61.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 61.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 59.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 59.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 58.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 58.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 54.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 53.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 53.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 52.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 51.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 51.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 50.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 50.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 49.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 48.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 48.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 47.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 47.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 46.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 45.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 44.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 43.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 42.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 42.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 40.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 40.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 36.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 34.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 34.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 34.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 33.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 29.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 29.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 27.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 27.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 25.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 22.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 22.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 21.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 21.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 21.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 20.4
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 20.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 17.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 16.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 14.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 14.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 11.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 11.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 11.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 11.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 10.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 9.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 9.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 9.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 8.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 8.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 8.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 8.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 7.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 7.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 6.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 5.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 5.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 3.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 3.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 2.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 0.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 0.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 0.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 0.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 0.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 0.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 0.7
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 0.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 0.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 0.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 0.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 0.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 0.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 0.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 0.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 0.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 0.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 0.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 0.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 0.3
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 0.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 0.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 0.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 0.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 0.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 0.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1.8
FF:10204-103F6 68 years, female 1.8

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