HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:16.8 nTPM
HPA Brain:91.4 nTPM
GTEx:16.8 nTPM
FANTOM5:32.8 Scaled Tags Per Million
Pig:108.9 nTPM
Mouse:63.7 nTPM
Allen mouse:11.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038814
Glial cells Not detected
Neuronal cells Not detected

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 91.4
Sample id Sample description nTPM
Hippocampus
nTPM: 74.0
2621 Female, age 67, right hemisphere 130.2
2148 Female, age 91, left hemisphere 86.1
1911 Female, age 85, right hemisphere 60.4
1898 Male, age 80, left hemisphere 59.8
1855 Male, age 76, left hemisphere 55.9
2529 Female, age 94, left hemisphere 51.5
Dentate gyrus
nTPM: 76.8
1927 Female, age 91, both hemispheres 101.4
2530 Female, age 94, left hemisphere 92.0
2531 Female, age 67, both hemispheres 83.6
2246 Female, age 85, both hemispheres 72.1
2010 Male, age 76, both hemispheres 59.0
2528 Male, age 74, both hemispheres 52.4
Entorhinal gyrus
nTPM: 69.1
2613 Female, age 94, left hemisphere 121.2
1938 Female, age 85, left hemisphere 67.8
2686 Male, age 75, right hemisphere 67.0
1787 Male, age 76, left hemisphere 60.8
2764 Male, age 80, right hemisphere 60.2
2117 Female, age 91, right hemisphere 37.4
Hippocampus, CA1
nTPM: 83.7
2749 Male, age 80, left hemisphere 149.4
1873 Female, age 85, both hemispheres 76.3
2082 Female, age 91, right hemisphere 66.6
2527 Male, age 74, both hemispheres 64.6
2045 Male, age 76, both hemispheres 61.6
Hippocampus, CA2
nTPM: 65.3
1963 Male, age 80, left hemisphere 83.9
1892 Male, age 76, both hemispheres 83.3
2437 Female, age 94, left hemisphere 68.7
2249 Male, age 74, both hemispheres 61.0
2113 Female, age 91, right hemisphere 49.2
1940 Female, age 85, left hemisphere 45.8
Hippocampus, CA3
nTPM: 91.4
2620 Female, age 94, left hemisphere 125.1
2137 Male, age 80, left hemisphere 122.3
2861 Female, age 67, both hemispheres 110.1
1867 Male, age 76, both hemispheres 72.9
2436 Male, age 74, both hemispheres 63.5
1891 Female, age 85, both hemispheres 54.5
Parahippocampal cortex
nTPM: 66.0
2245 Female, age 91, both hemispheres 90.7
2622 Female, age 67, right hemisphere 83.5
2693 Female, age 94, both hemispheres 69.8
2250 Female, age 67, right hemisphere 69.3
1990 Female, age 91, right hemisphere 67.3
2692 Male, age 74, both hemispheres 65.2
1850 Male, age 80, both hemispheres 62.9
1933 Female, age 85, both hemispheres 60.1
2532 Female, age 72, left hemisphere 54.2
2018 Male, age 76, both hemispheres 37.2
Perirhinal gyrus
nTPM: 67.8
1847 Female, age 91, left hemisphere 99.2
2521 Female, age 94, right hemisphere 66.3
1794 Male, age 80, right hemisphere 62.1
2848 Male, age 76, right hemisphere 57.0
1841 Female, age 85, right hemisphere 54.6
Subiculum
nTPM: 59.3
2438 Female, age 94, left hemisphere 78.0
1901 Male, age 80, both hemispheres 70.9
1977 Female, age 85, both hemispheres 60.5
2619 Male, age 74, both hemispheres 60.4
2042 Male, age 76, both hemispheres 46.8
2729 Female, age 91, right hemisphere 39.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 16.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.8
Samples: 255

Max nTPM: 50.0
Min nTPM: 0.6
Std nTPM: 11.1
Median nTPM: 15.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 50.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 48.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 47.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 46.8
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 41.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 40.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 39.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 39.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 39.7
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 39.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 38.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 32.8
FF:10169-103B7 60 years, female 40.5
FF:10153-102I9 76 years, female 25.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 108.9
Pig sample Sample description nTPM
Subiculum
nTPM: 93.2
Samples: 4

Max nTPM: 127.3
Min nTPM: 79.9
Sample A Female 127.3
Sample B Female 82.3
Sample C Male 83.1
Sample D Male 79.9
Dorsal hippocampus
nTPM: 79.8
Samples: 4

Max nTPM: 86.4
Min nTPM: 73.2
Sample A Female 86.4
Sample B Female 78.5
Sample C Male 81.1
Sample D Male 73.2
Entorhinal cortex
nTPM: 108.9
Samples: 4

Max nTPM: 132.8
Min nTPM: 93.7
Sample A Female 98.0
Sample B Female 111.0
Sample C Male 132.8
Sample D Male 93.7
Ventral hippocampus
nTPM: 72.2
Samples: 4

Max nTPM: 99.0
Min nTPM: 47.9
Sample A Female 47.9
Sample B Female 63.0
Sample C Male 79.0
Sample D Male 99.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 63.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 63.7
Samples: 4

Max nTPM: 72.0
Min nTPM: 58.7
Sample A Male 62.1
Sample B Male 61.9
Sample C Female 58.7
Sample D Female 72.0
Hippocampal formation
nTPM: 60.8
Samples: 4

Max nTPM: 65.3
Min nTPM: 56.3
Sample A Male 58.2
Sample B Male 63.2
Sample C Female 65.3
Sample D Female 56.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 11.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.0
70231074 Antisense, RP_050526_01_B06, Mouse strain C57BL/6J (56 days, male) 11.0

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