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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.3
nTPM
Monaco:
14.1
nTPM
Schmiedel:
9.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.3
HPA sample
nTPM
gdT-cell nTPM: 6.1
Samples: 6
Max nTPM: 12.8
Min nTPM: 2.6
P10809_1007
4.7
P10809_1022
5.8
P10809_1041
7.0
P10809_1060
3.7
P10809_1077
2.6
P10809_1098
12.8
MAIT T-cell nTPM: 7.0
Samples: 6
Max nTPM: 12.2
Min nTPM: 3.9
P10809_1006
6.4
P10809_1024
6.8
P10809_1043
12.2
P10809_1062
7.2
P10809_1083
3.9
P10809_1097
5.6
Memory CD4 T-cell nTPM: 8.8
Samples: 6
Max nTPM: 12.2
Min nTPM: 5.8
P10809_1014
8.1
P10809_1026
8.9
P10809_1045
11.5
P10809_1064
6.2
P10809_1086
5.8
P10809_1113
12.2
Memory CD8 T-cell nTPM: 6.7
Samples: 5
Max nTPM: 9.9
Min nTPM: 3.5
P10809_1012
4.3
P10809_1027
9.2
P10809_1046
6.4
P10809_1065
3.5
P10809_1111
9.9
Naive CD4 T-cell nTPM: 11.3
Samples: 6
Max nTPM: 14.0
Min nTPM: 7.6
P10809_1015
7.6
P10809_1030
13.2
P10809_1049
14.0
P10809_1068
9.0
P10809_1085
11.4
P10809_1112
12.6
Naive CD8 T-cell nTPM: 10.9
Samples: 6
Max nTPM: 17.2
Min nTPM: 6.5
P10809_1016
9.4
P10809_1031
7.4
P10809_1050
9.6
P10809_1069
15.0
P10809_1087
6.5
P10809_1110
17.2
T-reg nTPM: 6.1
Samples: 6
Max nTPM: 9.9
Min nTPM: 2.4
P10809_1018
2.4
P10809_1037
3.5
P10809_1056
4.1
P10809_1075
9.9
P10809_1094
7.1
P10809_1106
9.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 9.9
Samples: 4
Max nTPM: 11.3
Min nTPM: 8.4
RHH5202_R3573
9.0
RHH5230_R3602
8.4
RHH5259_R3631
10.7
RHH5288_R3660
11.3
Effector memory CD8 T-cell nTPM: 8.9
Samples: 4
Max nTPM: 11.4
Min nTPM: 5.1
RHH5203_R3574
5.1
RHH5231_R3603
11.4
RHH5260_R3632
10.1
RHH5289_R3661
9.1
MAIT T-cell nTPM: 9.5
Samples: 4
Max nTPM: 11.2
Min nTPM: 8.2
RHH5233_R3605
10.1
RHH5205_R3576
8.4
RHH5262_R3634
8.2
RHH5297_R3663
11.2
Memory CD4 T-cell TFH nTPM: 10.8
Samples: 4
Max nTPM: 13.4
Min nTPM: 7.0
RHH5300_R3666
10.2
RHH5236_R3608
12.7
RHH5265_R3637
13.4
RHH5208_R3579
7.0
Memory CD4 T-cell Th1 nTPM: 10.7
Samples: 4
Max nTPM: 17.2
Min nTPM: 6.5
RHH5210_R3581
11.7
RHH5302_R3668
6.5
RHH5238_R3610
7.5
RHH5267_R3639
17.2
Memory CD4 T-cell Th1/Th17 nTPM: 10.6
Samples: 4
Max nTPM: 15.3
Min nTPM: 6.9
RHH5303_R3669
12.0
RHH5211_R3582
6.9
RHH5239_R3611
15.3
RHH5268_R3640
8.2
Memory CD4 T-cell Th17 nTPM: 12.0
Samples: 4
Max nTPM: 14.4
Min nTPM: 9.2
RHH5304_R3670
13.0
RHH5212_R3583
9.2
RHH5240_R3612
14.4
RHH5269_R3641
11.4
Memory CD4 T-cell Th2 nTPM: 11.1
Samples: 4
Max nTPM: 17.5
Min nTPM: 7.2
RHH5305_R3671
10.8
RHH5213_R3584
7.2
RHH5241_R3613
17.5
RHH5270_R3642
8.7
Naive CD4 T-cell nTPM: 12.1
Samples: 4
Max nTPM: 16.2
Min nTPM: 8.9
RHH5306_R3672
16.2
RHH5214_R3585
8.9
RHH5242_R3614
10.7
RHH5271_R3643
12.6
Naive CD8 T-cell nTPM: 14.1
Samples: 4
Max nTPM: 20.3
Min nTPM: 8.3
RHH5201_R3572
8.3
RHH5229_R3601
20.3
RHH5258_R3630
17.0
RHH5287_R3659
10.6
Non-Vd2 gdTCR nTPM: 6.9
Samples: 4
Max nTPM: 8.1
Min nTPM: 5.6
RHH5235_R3607
8.1
RHH5264_R3636
8.1
RHH5207_R3578
5.6
RHH5299_R3665
5.6
T-reg nTPM: 7.8
Samples: 4
Max nTPM: 11.0
Min nTPM: 6.1
RHH5301_R3667
11.0
RHH5237_R3609
6.1
RHH5266_R3638
6.7
RHH5209_R3580
7.3
Terminal effector memory CD4 T-cell nTPM: 6.0
Samples: 2
Max nTPM: 6.3
Min nTPM: 5.6
RHH5243_R3615
5.6
RHH5272_R3644
6.3
Terminal effector memory CD8 T-cell nTPM: 8.3
Samples: 4
Max nTPM: 10.1
Min nTPM: 6.0
RHH5232_R3604
10.0
RHH5204_R3575
6.0
RHH5261_R3633
7.0
RHH5296_R3662
10.1
Vd2 gdTCR nTPM: 10.4
Samples: 4
Max nTPM: 21.7
Min nTPM: 4.7
RHH5234_R3606
6.6
RHH5206_R3577
4.7
RHH5263_R3635
8.7
RHH5298_R3664
21.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
