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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:5.9 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:1.2 nTPM
Allen mouse:0.0 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.9
Sample id Sample description nTPM
Area postrema
nTPM: 4.1
2306 Male, age 80, both hemispheres 4.9
2799 Male, age 61, both hemispheres 4.1
2054 Male, age 76, both hemispheres 3.2
Dorsal medullary reticular nucleus
nTPM: 3.7
2373 Male, age 61, both hemispheres 4.2
2040 Female, age 85, both hemispheres 3.6
2088 Male, age 76, both hemispheres 3.4
Dorsal motor vagal complex
nTPM: 4.4
2797 Male, age 61, both hemispheres 6.4
2000 Male, age 74, unknown 5.6
2185 Male, age 76, both hemispheres 4.3
2807 Female, age 85, both hemispheres 4.1
2133 Female, age 91, both hemispheres 4.0
2844 Male, age 55, unknown 3.9
2643 Male, age 74, both hemispheres 3.5
2813 Female, age 72, unknown 3.5
Gigantocellular reticular nuclei, medullary
nTPM: 4.4
1876 Female, age 85, both hemispheres 5.5
2022 Male, age 76, right hemisphere 4.6
2387 Female, age 91, both hemispheres 4.6
2314 Male, age 61, both hemispheres 4.4
2310 Male, age 80, both hemispheres 3.8
2462 Male, age 74, both hemispheres 3.6
Gigantocellular reticular nuclei, pars
nTPM: 4.6
2168 Male, age 76, both hemispheres 5.1
2084 Female, age 85, both hemispheres 4.9
2336 Male, age 61, both hemispheres 4.4
2330 Male, age 80, both hemispheres 4.3
2706 Male, age 80, both hemispheres 4.1
Inferior olive
nTPM: 4.9
2178 Male, age 61, both hemispheres 6.1
2563 Male, age 74, both hemispheres 6.0
2379 Male, age 80, both hemispheres 5.1
2085 Female, age 85, both hemispheres 4.5
2628 Female, age 91, both hemispheres 2.9
Lateral medullary reticular nucleus
nTPM: 4.4
2044 Male, age 76, both hemispheres 5.1
2374 Male, age 61, both hemispheres 4.9
2305 Male, age 74, both hemispheres 4.5
2190 Female, age 85, both hemispheres 4.4
2852 Male, age 80, both hemispheres 3.8
2804 Female, age 91, both hemispheres 3.7
Medial olivary nucleus
nTPM: 5.4
1962 Male, age 76, both hemispheres 6.5
2138 Female, age 91, both hemispheres 5.5
1943 Male, age 61, both hemispheres 5.3
2851 Male, age 80, both hemispheres 4.2
Medial vestibular nucleus
nTPM: 4.2
2803 Female, age 91, both hemispheres 5.3
2743 Female, age 85, both hemispheres 4.9
2624 Male, age 61, both hemispheres 4.1
2801 Male, age 74, both hemispheres 4.1
2093 Male, age 80, both hemispheres 3.8
2134 Male, age 76, both hemispheres 3.1
Motor hypoglossal nucleus
nTPM: 4.0
2125 Female, age 91, both hemispheres 4.5
2132 Female, age 85, both hemispheres 4.4
2182 Male, age 80, both hemispheres 3.8
2461 Male, age 61, both hemispheres 3.7
2277 Male, age 76, both hemispheres 3.6
Nucleus ambiguus
nTPM: 2.6
2071 Male, age 76, both hemispheres 3.3
2096 Female, age 85, both hemispheres 2.0
Nucleus cuneatus
nTPM: 4.3
2376 Male, age 61, both hemispheres 6.5
2380 Male, age 80, both hemispheres 5.1
2808 Female, age 85, both hemispheres 4.2
2564 Male, age 74, both hemispheres 4.1
2100 Male, age 76, both hemispheres 3.9
2805 Female, age 91, both hemispheres 3.8
2381 Male, age 80, both hemispheres 3.7
2131 Male, age 76, both hemispheres 3.5
2562 Male, age 61, both hemispheres 3.4
Nucleus gracilis
nTPM: 4.2
2382 Male, age 80, both hemispheres 5.0
2627 Male, age 74, both hemispheres 3.9
2299 Female, age 85, both hemispheres 3.7
Nucleus raphe obscurus
nTPM: 4.9
2142 Male, age 76, midline 5.4
2800 Male, age 61, midline 4.7
2845 Female, age 85, midline 4.6
Nucleus raphe pallidus
nTPM: 5.9
2145 Male, age 76, midline 8.2
1924 Male, age 61, midline 6.4
2183 Male, age 80, midline 3.2
Nucleus tractus solitarii
nTPM: 5.9
2144 Female, age 91, right hemisphere 11.1
2191 Female, age 85, both hemispheres 5.4
2307 Male, age 80, both hemispheres 3.7
2656 Male, age 76, both hemispheres 3.4
Parvicellular reticular nuclei
nTPM: 4.4
2095 Male, age 76, both hemispheres 4.5
2558 Male, age 74, both hemispheres 4.4
2119 Male, age 80, both hemispheres 4.2
Parvicellular reticular nuclei, medullary
nTPM: 3.8
2091 Female, age 85, both hemispheres 4.7
2189 Female, age 91, both hemispheres 3.4
2181 Male, age 80, left hemisphere 3.2
Peritrigeminal nucleus
nTPM: 3.8
2136 Male, age 76, both hemispheres 5.6
2179 Male, age 61, both hemispheres 3.1
2067 Female, age 85, both hemispheres 2.6
Prepositus hypoglossal nucleus
nTPM: 4.1
2855 Female, age 85, right hemisphere 5.0
2086 Male, age 80, both hemispheres 3.3
Spinal trigeminal nucleus, caudal
nTPM: 4.4
2312 Male, age 61, both hemispheres 4.9
2642 Male, age 74, both hemispheres 4.9
2390 Female, age 91, both hemispheres 4.6
2447 Male, age 76, both hemispheres 4.4
2308 Male, age 80, both hemispheres 3.2
Spinal trigeminal nucleus, interpolar
nTPM: 3.8
2389 Female, age 91, both hemispheres 4.6
2066 Male, age 76, right hemisphere 4.2
2033 Male, age 80, both hemispheres 3.9
2386 Female, age 85, both hemispheres 3.9
2625 Male, age 61, both hemispheres 2.7
Spinal vestibular nucleus
nTPM: 4.3
2806 Female, age 85, both hemispheres 7.2
2748 Male, age 76, both hemispheres 4.4
2384 Male, age 74, both hemispheres 4.2
2796 Male, age 61, both hemispheres 3.7
2780 Male, age 80, both hemispheres 3.1
2186 Female, age 91, both hemispheres 2.9
Superior vestibular nucleus
nTPM: 4.0
2383 Male, age 74, both hemispheres 5.4
2061 Male, age 76, both hemispheres 3.9
2015 Male, age 80, both hemispheres 2.9
Ventral medullary reticular nucleus
nTPM: 5.5
2372 Male, age 61, both hemispheres 6.6
2060 Male, age 76, both hemispheres 4.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 4.3
2180 Male, age 61, both hemispheres 4.6
1986 Male, age 76, both hemispheres 4.5
2118 Male, age 80, both hemispheres 4.4
2741 Female, age 85, both hemispheres 4.1
2302 Female, age 91, both hemispheres 3.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 25.9
FF:10174-103C3 60 years, female 33.7
FF:10155-103A2 76 years, female 24.9
FF:10038-101F2 18-64 years, mixed 19.2

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1.2
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.0
Sample A Female 1.1
Sample B Female 1.0
Sample C Male 1.5
Sample D Male 1.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.0
532722 Antisense, RP_040825_01_G09, Mouse strain C57BL/6J (56 days, male) 0.1
71161006 Antisense, RP_050810_02_D07, Mouse strain C57BL/6J (56 days, male) 0.0

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