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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:36.9 nTPM
GTEx:36.9 nTPM
FANTOM5:22.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA046265
Squamous epithelial cells High



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 36.9
Samples: 156

Max nTPM: 105.1
Min nTPM: 21.3
Std nTPM: 8.9
Median nTPM: 35.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 105.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 56.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 55.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 53.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 53.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 51.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 50.9
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 49.8
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 49.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 48.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 48.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 48.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 48.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 47.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 47.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 47.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 47.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 46.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 46.3
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 45.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 45.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 44.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 44.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 44.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 44.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 44.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 44.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 44.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 44.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 43.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 43.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 42.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 42.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 42.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 42.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 42.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 42.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 42.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 42.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 41.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 40.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 40.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 40.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 40.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 39.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 39.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 39.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 39.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 38.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 38.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 38.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 38.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 38.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 38.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 38.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 38.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 37.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 37.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 37.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 37.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 37.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 37.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 37.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 37.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 36.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 36.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 36.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 36.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 36.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 35.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 35.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 35.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 35.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 35.7
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 35.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 35.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 35.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 35.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 35.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 35.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 35.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 34.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 34.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 34.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 34.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 34.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 34.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 34.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 34.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 34.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 34.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 34.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 34.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 34.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 34.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 34.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 34.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 33.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 33.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 33.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 33.4
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 33.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 33.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 33.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 32.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 32.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 32.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 32.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 32.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 32.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 32.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 32.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 32.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 32.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 32.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 32.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 31.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 31.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 31.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 31.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 31.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 31.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 31.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 31.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 30.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 30.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 30.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 30.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 30.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 30.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 29.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 29.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 29.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 29.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 29.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 29.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 28.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 28.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 28.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 28.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 27.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 27.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 27.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 27.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 27.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 26.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 26.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 26.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 26.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 25.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 24.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 24.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 24.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 24.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 24.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 21.3
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

22.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 22.1
FF:10204-103F6 68 years, female 22.1

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