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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • PSMB1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:128.4 nTPM
FANTOM5:174.7 Scaled Tags Per Million
Pig:98.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA029635Antibody HPA029637Antibody CAB033911
Glial cells Not detectedLowNot detected
Neuronal cells MediumMediumLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 128.4
Samples: 300

Max nTPM: 245.8
Min nTPM: 81.8
Std nTPM: 27.0
Median nTPM: 124.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 245.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 229.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 222.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 218.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 211.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 207.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 198.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 193.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 192.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 188.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 187.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 186.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 184.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 183.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 180.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 179.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 177.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 177.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 177.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 176.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 175.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 174.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 174.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 173.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 171.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 170.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 169.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 167.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 167.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 167.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 162.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 161.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 160.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 160.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 160.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 159.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 158.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 156.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 154.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 154.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 153.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 153.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 153.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 152.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 152.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 151.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 150.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 149.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 149.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 149.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 148.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 148.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 148.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 147.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 147.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 147.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 147.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 147.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 146.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 146.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 146.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 146.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 146.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 145.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 145.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 145.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 145.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 145.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 143.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 143.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 143.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 142.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 142.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 142.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 141.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 141.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 141.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 140.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 140.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 140.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 140.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 140.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 140.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 138.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 138.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 138.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 137.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 137.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 137.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 137.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 137.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 136.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 136.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 135.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 135.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 135.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 135.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 135.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 134.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 134.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 134.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 134.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 134.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 134.1
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 133.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 133.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 133.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 131.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 131.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 130.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 130.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 130.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 130.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 129.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 129.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 129.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 129.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 129.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 129.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 129.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 129.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 128.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 128.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 128.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 128.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 128.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 128.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 128.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 127.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 127.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 127.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 127.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 126.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 126.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 126.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 126.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 126.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 126.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 125.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 125.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 125.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 125.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 125.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 125.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 125.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 125.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 125.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 124.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 124.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 124.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 124.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 124.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 124.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 124.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 124.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 124.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 124.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 124.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 124.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 123.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 123.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 123.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 122.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 122.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 122.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 122.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 122.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 121.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 121.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 121.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 120.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 120.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 120.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 120.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 120.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 119.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 119.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 119.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 119.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 119.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 118.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 118.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 118.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 118.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 118.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 117.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 117.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 117.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 116.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 116.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 116.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 116.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 116.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 116.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 115.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 115.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 115.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 114.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 114.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 114.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 114.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 113.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 113.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 113.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 113.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 113.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 113.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 112.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 112.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 112.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 112.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 111.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 111.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 111.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 111.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 110.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 110.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 110.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 110.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 110.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 109.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 109.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 109.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 109.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 108.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 108.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 108.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 108.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 108.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 108.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 108.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 107.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 107.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 107.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 107.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 107.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 107.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 106.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 106.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 106.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 106.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 105.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 105.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 105.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 105.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 105.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 105.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 105.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 105.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 105.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 104.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 104.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 104.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 104.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 104.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 103.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 103.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 103.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 103.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 103.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 102.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 101.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 101.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 101.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 101.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 100.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 99.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 99.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 99.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 99.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 99.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 99.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 98.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 98.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 98.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 97.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 96.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 95.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 95.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 95.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 94.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 93.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 93.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 93.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 93.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 92.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 91.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 91.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 91.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 90.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 89.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 89.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 88.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 87.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 86.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 85.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 84.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 83.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 83.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 81.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

174.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 174.7
FF:10164-103B2 76 years, female 174.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.1
Pig sample Sample description nTPM
Caudate
nTPM: 98.1
Samples: 4

Max nTPM: 110.9
Min nTPM: 79.8
Sample A Female 95.9
Sample B Female 105.7
Sample C Male 110.9
Sample D Male 79.8

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