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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:154.4 nTPM
HPA Brain:270.0 nTPM
GTEx:154.4 nTPM
FANTOM5:165.6 Scaled Tags Per Million
Pig:208.7 nTPM
Mouse:278.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

270.0
Sample id Sample description nTPM
Amygdala
nTPM: 135.1
2517 Female, age 94, left hemisphere 186.7
1987 Female, age 91, left hemisphere 184.3
2814 Male, age 76, right hemisphere 144.8
2514 Male, age 75, right hemisphere 99.9
2695 Female, age 67, right hemisphere 59.5
Basal amygdala
nTPM: 246.5
2243 Female, age 91, right hemisphere 368.2
2685 Female, age 94, left hemisphere 350.3
2110 Male, age 80, left hemisphere 239.7
1955 Male, age 76, both hemispheres 205.2
2827 Female, age 67, right hemisphere 196.5
2609 Male, age 75, right hemisphere 118.9
Central amygdala
nTPM: 208.1
2826 Female, age 94, left hemisphere 305.8
2239 Male, age 80, left hemisphere 304.1
2701 Female, age 91, right hemisphere 209.5
1905 Male, age 76, both hemispheres 126.6
2515 Male, age 75, right hemisphere 94.4
Corticomedial amygdala
nTPM: 270.0
2242 Female, age 91, right hemisphere 399.3
2535 Female, age 67, right hemisphere 320.4
2829 Male, age 80, left hemisphere 296.1
2429 Female, age 94, left hemisphere 284.9
2240 Male, age 76, both hemispheres 232.8
2428 Male, age 75, right hemisphere 86.7
Lateral amygdala
nTPM: 189.8
2534 Female, age 94, left hemisphere 357.0
2255 Female, age 91, right hemisphere 239.0
2256 Male, age 80, left hemisphere 211.7
1883 Male, age 76, both hemispheres 175.9
2830 Female, age 67, right hemisphere 85.3
2516 Male, age 75, right hemisphere 69.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 154.4
Samples: 152

Max nTPM: 498.0
Min nTPM: 4.8
Std nTPM: 89.9
Median nTPM: 140.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 498.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 437.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 358.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 343.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 329.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 322.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 319.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 306.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 286.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 277.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 276.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 275.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 270.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 269.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 268.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 262.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 262.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 261.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 261.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 259.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 257.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 257.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 256.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 253.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 253.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 252.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 251.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 251.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 245.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 244.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 238.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 236.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 235.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 233.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 229.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 224.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 223.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 220.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 220.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 219.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 216.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 214.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 211.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 211.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 209.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 208.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 206.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 204.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 190.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 189.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 186.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 185.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 185.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 183.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 179.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 179.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 178.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 177.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 176.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 169.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 169.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 167.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 164.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 163.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 160.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 160.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 157.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 153.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 152.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 151.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 150.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 146.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 144.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 143.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 142.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 140.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 140.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 137.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 137.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 137.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 137.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 136.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 136.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 134.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 133.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 130.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 129.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 117.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 116.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 116.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 115.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 113.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 112.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 112.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 112.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 107.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 106.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 106.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 105.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 99.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 99.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 96.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 95.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 94.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 93.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 91.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 89.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 86.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 85.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 85.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 85.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 85.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 83.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 82.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 81.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 80.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 78.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 77.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 76.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 75.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 74.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 73.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 71.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 65.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 64.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 63.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 62.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 61.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 61.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 61.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 60.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 59.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 59.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 57.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 57.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 53.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 52.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 52.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 52.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 51.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 47.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 40.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 35.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 32.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 32.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 28.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 25.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 25.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 14.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 13.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 8.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

165.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 165.6
FF:10151-102I7 76 years, female 165.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.7
Pig sample Sample description nTPM
Amygdala
nTPM: 208.7
Samples: 4

Max nTPM: 308.5
Min nTPM: 137.2
Sample A Female 308.5
Sample B Female 137.2
Sample C Male 201.2
Sample D Male 187.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 278.1
Samples: 4

Max nTPM: 310.2
Min nTPM: 259.4
Sample A Male 278.5
Sample B Male 259.4
Sample C Female 310.2
Sample D Female 264.3

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