MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.8 nTPM
HPA Brain:11.4 nTPM
GTEx:21.8 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:80.9 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.3
2411 Female, age 72, unknown 14.0
2019 Male, age 18, unknown 13.3
1870 Female, age 42, unknown 11.6
1827 Male, age 72, unknown 11.4
1833 Male, age 53, unknown 10.8
1830 Male, age 51, unknown 10.4
2666 Male, age 74, left hemisphere 8.5
2219 Male, age 76, both hemispheres 8.1
2828 Female, age 72, unknown 7.8
2586 Male, age 75, left hemisphere 6.8
Dorsal raphe nucleus
nTPM: 10.2
2750 Male, age 76, both hemispheres 12.1
2298 Female, age 72, unknown 10.7
2047 Male, age 72, unknown 9.9
1828 Male, age 53, unknown 9.7
2016 Female, age 72, unknown 8.7
Inferior colliculus
nTPM: 10.8
2097 Female, age 72, unknown 12.7
1848 Female, age 42, unknown 11.4
1890 Male, age 53, unknown 10.3
2849 Male, age 72, unknown 8.8
Median raphe nucleus
nTPM: 10.2
2220 Male, age 76, midline 10.2
Periaquaductal grey, anterior
nTPM: 10.6
2502 Female, age 75, unknown 11.9
1947 Male, age 18, unknown 11.4
1795 Male, age 51, unknown 8.5
Periaquaductal grey, dorsal
nTPM: 9.2
2464 Female, age 72, unknown 10.6
1840 Male, age 53, unknown 9.5
1831 Male, age 72, unknown 8.8
2850 Male, age 76, both hemispheres 7.8
Periaquaductal grey, lateral
nTPM: 9.6
2272 Male, age 74, both hemispheres 10.8
2053 Male, age 18, unknown 9.6
2140 Male, age 76, both hemispheres 8.5
Pretectal area
nTPM: 10.9
1817 Female, age 42, unknown 12.0
2667 Female, age 75, unknown 11.8
2316 Male, age 76, right hemisphere 11.7
2007 Male, age 72, unknown 11.6
2224 Female, age 72, unknown 11.4
1816 Male, age 51, unknown 11.0
1815 Male, age 53, unknown 10.9
1944 Female, age 72, unknown 10.5
2273 Male, age 74, both hemispheres 10.4
2825 Male, age 18, unknown 9.4
2407 Male, age 75, both hemispheres 9.0
Red nucleus
nTPM: 11.4
1821 Female, age 72, unknown 13.7
1865 Male, age 51, unknown 13.2
1954 Female, age 42, unknown 13.1
2227 Male, age 72, unknown 12.0
2769 Male, age 72, unknown 11.8
1904 Male, age 53, unknown 11.6
2823 Male, age 76, right hemisphere 11.4
2785 Male, age 18, unknown 11.2
2588 Male, age 74, left hemisphere 10.6
2503 Female, age 72, unknown 10.0
2584 Male, age 75, left hemisphere 9.3
2725 Female, age 75, unknown 9.0
Substantia nigra
nTPM: 9.6
1889 Female, age 72, unknown 11.9
2409 Female, age 72, unknown 11.3
1941 Male, age 53, unknown 10.6
2583 Male, age 75, right hemisphere 10.1
2241 Male, age 72, unknown 9.8
1851 Male, age 51, unknown 9.6
2590 Female, age 75, unknown 9.6
1916 Female, age 42, unknown 9.1
2665 Male, age 74, both hemispheres 7.4
2699 Male, age 18, unknown 6.8
Superior colliculus
nTPM: 10.5
2261 Male, age 18, unknown 11.7
1839 Male, age 51, unknown 11.6
1895 Male, age 76, right hemisphere 11.5
1913 Female, age 42, unknown 11.2
2668 Female, age 75, unknown 10.5
1796 Male, age 53, unknown 10.4
2587 Male, age 74, left hemisphere 10.4
1995 Male, age 72, unknown 9.8
2087 Female, age 72, unknown 9.1
2664 Male, age 75, both hemispheres 9.0
Ventral tegmental area
nTPM: 10.0
2410 Female, age 72, unknown 13.7
2223 Female, age 72, unknown 11.2
1915 Female, age 42, unknown 9.6
1942 Male, age 51, unknown 8.8
2021 Male, age 53, unknown 8.5
2218 Male, age 76, both hemispheres 8.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.8
Samples: 183

Max nTPM: 41.4
Min nTPM: 13.8
Std nTPM: 5.3
Median nTPM: 20.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 41.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 39.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 38.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 34.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 34.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 34.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 33.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 33.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 33.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.3
FF:10158-103A5 76 years, female 31.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 36.5
Min nTPM: 19.3
Sample A Female 36.5
Sample B Female 27.8
Sample C Male 29.7
Sample D Male 19.3
Midbrain
nTPM: 26.1
Samples: 4

Max nTPM: 27.9
Min nTPM: 23.3
Sample A Female 26.7
Sample B Female 26.6
Sample C Male 23.3
Sample D Male 27.9
Periaqueductal gray
nTPM: 22.8
Samples: 3

Max nTPM: 23.8
Min nTPM: 21.9
Sample B Female 21.9
Sample C Male 23.8
Sample D Male 22.8
Superior colliculi
nTPM: 28.4
Samples: 4

Max nTPM: 34.0
Min nTPM: 25.2
Sample A Female 34.0
Sample B Female 28.2
Sample C Male 26.1
Sample D Male 25.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 80.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.0
Samples: 4

Max nTPM: 89.5
Min nTPM: 75.5
Sample A Male 77.0
Sample B Male 75.5
Sample C Female 81.8
Sample D Female 89.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
68545450 Antisense, RP_050120_01_A03, Mouse strain C57BL/6J (56 days, male) 2.4

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