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MGST1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MGST1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:200.6 nTPM
FANTOM5:512.8 Scaled Tags Per Million
Pig:60.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044840
Glial cells Low
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 200.6
Samples: 300

Max nTPM: 586.6
Min nTPM: 15.7
Std nTPM: 111.2
Median nTPM: 170.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 586.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 550.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 530.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 529.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 520.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 484.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 483.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 466.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 465.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 457.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 455.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 453.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 449.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 441.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 440.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 433.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 432.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 429.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 416.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 411.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 409.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 408.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 407.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 405.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 403.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 387.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 378.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 377.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 375.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 374.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 373.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 365.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 364.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 359.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 358.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 351.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 351.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 348.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 346.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 341.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 339.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 334.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 334.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 334.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 318.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 316.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 315.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 314.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 312.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 307.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 306.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 304.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 304.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 301.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 296.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 296.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 295.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 290.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 289.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 288.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 283.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 281.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 279.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 279.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 278.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 276.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 276.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 271.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 265.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 260.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 259.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 258.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 257.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 255.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 254.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 251.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 250.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 249.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 242.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 240.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 237.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 236.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 236.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 236.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 234.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 234.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 233.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 231.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 229.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 228.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 227.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 225.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 224.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 220.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 219.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 219.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 218.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 218.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 218.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 216.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 216.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 215.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 214.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 212.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 210.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 210.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 210.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 209.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 208.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 208.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 208.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 207.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 207.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 206.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 205.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 204.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 203.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 202.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 202.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 202.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 200.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 199.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 198.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 197.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 196.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 196.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 195.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 195.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 194.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 191.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 191.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 191.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 191.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 188.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 185.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 184.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 182.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 182.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 182.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 181.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 179.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 179.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 178.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 175.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 175.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 174.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 173.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 171.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 170.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 170.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 170.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 169.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 169.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 166.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 166.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 163.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 163.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 163.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 163.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 162.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 161.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 161.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 159.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 159.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 159.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 159.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 158.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 158.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 156.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 153.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 152.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 152.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 152.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 152.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 151.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 151.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 149.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 149.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 148.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 147.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 147.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 145.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 143.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 143.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 143.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 143.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 143.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 143.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 142.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 142.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 142.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 140.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 140.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 140.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 140.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 139.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 139.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 137.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 137.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 137.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 136.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 136.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 134.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 132.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 132.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 132.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 130.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 129.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 129.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 129.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 128.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 127.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 127.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 127.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 126.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 125.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 123.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 122.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 122.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 122.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 122.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 122.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 122.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 121.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 121.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 121.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 121.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 120.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 119.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 118.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 118.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 116.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 116.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 116.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 116.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 116.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 114.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 113.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 113.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 113.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 112.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 110.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 110.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 110.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 110.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 109.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 108.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 107.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 106.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 106.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 105.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 105.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 103.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 103.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 101.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 100.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 100.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 100.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 99.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 98.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 95.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 95.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 94.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 93.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 92.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 92.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 91.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 90.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 90.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 89.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 89.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 88.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 88.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 88.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 86.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 82.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 81.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 81.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 81.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 79.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 78.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 77.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 76.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 75.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 73.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 71.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 71.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 65.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 64.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 63.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 52.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 51.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 47.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 40.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 39.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 37.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 30.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 27.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 24.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 15.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

512.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 512.8
FF:10164-103B2 76 years, female 512.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.8
Pig sample Sample description nTPM
Caudate
nTPM: 60.8
Samples: 4

Max nTPM: 67.8
Min nTPM: 51.2
Sample A Female 51.2
Sample B Female 65.1
Sample C Male 67.8
Sample D Male 59.1

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