MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.1 nTPM
HPA Brain:138.7 nTPM
GTEx:40.1 nTPM
FANTOM5:38.3 Scaled Tags Per Million
Pig:79.5 nTPM
Mouse:114.8 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 138.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.7
2219 Male, age 76, both hemispheres 151.2
1827 Male, age 72, unknown 131.9
2586 Male, age 75, left hemisphere 123.8
2828 Female, age 72, unknown 122.5
2411 Female, age 72, unknown 112.5
2666 Male, age 74, left hemisphere 108.1
1870 Female, age 42, unknown 101.3
1833 Male, age 53, unknown 96.9
1830 Male, age 51, unknown 86.2
2019 Male, age 18, unknown 72.6
Dorsal raphe nucleus
nTPM: 112.0
2298 Female, age 72, unknown 138.1
2047 Male, age 72, unknown 123.7
2750 Male, age 76, both hemispheres 108.4
1828 Male, age 53, unknown 94.9
2016 Female, age 72, unknown 94.8
Inferior colliculus
nTPM: 93.6
2849 Male, age 72, unknown 102.0
2097 Female, age 72, unknown 95.7
1848 Female, age 42, unknown 90.8
1890 Male, age 53, unknown 86.1
Median raphe nucleus
nTPM: 127.3
2220 Male, age 76, midline 127.3
Periaquaductal grey, anterior
nTPM: 138.7
1795 Male, age 51, unknown 152.8
1947 Male, age 18, unknown 141.9
2502 Female, age 75, unknown 121.3
Periaquaductal grey, dorsal
nTPM: 113.1
1840 Male, age 53, unknown 135.4
1831 Male, age 72, unknown 110.8
2464 Female, age 72, unknown 107.8
2850 Male, age 76, both hemispheres 98.4
Periaquaductal grey, lateral
nTPM: 116.2
2053 Male, age 18, unknown 125.5
2272 Male, age 74, both hemispheres 112.8
2140 Male, age 76, both hemispheres 110.3
Pretectal area
nTPM: 113.5
1816 Male, age 51, unknown 141.8
1944 Female, age 72, unknown 132.6
2224 Female, age 72, unknown 130.2
2825 Male, age 18, unknown 123.7
2667 Female, age 75, unknown 109.4
2407 Male, age 75, both hemispheres 104.8
2007 Male, age 72, unknown 104.5
2273 Male, age 74, both hemispheres 103.3
1815 Male, age 53, unknown 102.5
2316 Male, age 76, right hemisphere 99.3
1817 Female, age 42, unknown 96.4
Red nucleus
nTPM: 80.5
2584 Male, age 75, left hemisphere 107.2
2725 Female, age 75, unknown 94.1
2588 Male, age 74, left hemisphere 91.8
2503 Female, age 72, unknown 79.2
1904 Male, age 53, unknown 78.8
2227 Male, age 72, unknown 78.8
2769 Male, age 72, unknown 78.1
2785 Male, age 18, unknown 76.3
2823 Male, age 76, right hemisphere 73.8
1954 Female, age 42, unknown 72.6
1821 Female, age 72, unknown 68.6
1865 Male, age 51, unknown 67.2
Substantia nigra
nTPM: 101.8
1916 Female, age 42, unknown 125.2
1851 Male, age 51, unknown 110.1
2590 Female, age 75, unknown 105.6
2665 Male, age 74, both hemispheres 105.1
2241 Male, age 72, unknown 101.8
1889 Female, age 72, unknown 100.8
1941 Male, age 53, unknown 99.1
2699 Male, age 18, unknown 94.6
2583 Male, age 75, right hemisphere 92.1
2409 Female, age 72, unknown 83.3
Superior colliculus
nTPM: 111.5
2261 Male, age 18, unknown 149.7
1796 Male, age 53, unknown 144.1
2087 Female, age 72, unknown 130.6
2664 Male, age 75, both hemispheres 118.1
2668 Female, age 75, unknown 104.3
1839 Male, age 51, unknown 102.2
1895 Male, age 76, right hemisphere 95.1
2587 Male, age 74, left hemisphere 94.2
1913 Female, age 42, unknown 93.6
1995 Male, age 72, unknown 83.1
Ventral tegmental area
nTPM: 109.9
1915 Female, age 42, unknown 116.0
1942 Male, age 51, unknown 115.8
2021 Male, age 53, unknown 111.6
2218 Male, age 76, both hemispheres 108.1
2410 Female, age 72, unknown 106.0
2223 Female, age 72, unknown 101.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.1
Samples: 183

Max nTPM: 74.7
Min nTPM: 18.3
Std nTPM: 11.2
Median nTPM: 37.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 74.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 73.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 73.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 71.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 70.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 70.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 66.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 66.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 62.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 61.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.3
FF:10158-103A5 76 years, female 38.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 79.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.8
Samples: 4

Max nTPM: 94.7
Min nTPM: 56.7
Sample A Female 92.6
Sample B Female 67.3
Sample C Male 94.7
Sample D Male 56.7
Midbrain
nTPM: 79.5
Samples: 4

Max nTPM: 112.8
Min nTPM: 63.7
Sample A Female 71.8
Sample B Female 63.7
Sample C Male 112.8
Sample D Male 69.6
Periaqueductal gray
nTPM: 67.0
Samples: 3

Max nTPM: 80.0
Min nTPM: 56.8
Sample B Female 64.2
Sample C Male 80.0
Sample D Male 56.8
Superior colliculi
nTPM: 74.3
Samples: 4

Max nTPM: 84.4
Min nTPM: 69.0
Sample A Female 69.9
Sample B Female 69.0
Sample C Male 84.4
Sample D Male 73.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 114.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.8
Samples: 4

Max nTPM: 119.9
Min nTPM: 108.3
Sample A Male 116.8
Sample B Male 108.3
Sample C Female 114.2
Sample D Female 119.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
69134550 Antisense, RP_050321_03_B02, Mouse strain C57BL/6J (56 days, male) 5.5
73811513 Antisense, RP_051212_03_C12, Mouse strain C57BL/6J (56 days, male) 2.4

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