HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:33.6 nTPM
GTEx:9.6 nTPM
FANTOM5:29.7 Scaled Tags Per Million
Pig:1.4 nTPM
Mouse:14.0 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 33.6
Sample id Sample description nTPM
Hippocampus
nTPM: 25.5
1898 Male, age 80, left hemisphere 28.5
2621 Female, age 67, right hemisphere 27.5
2529 Female, age 94, left hemisphere 26.2
1855 Male, age 76, left hemisphere 24.7
2148 Female, age 91, left hemisphere 24.1
1911 Female, age 85, right hemisphere 22.0
Dentate gyrus
nTPM: 24.9
2530 Female, age 94, left hemisphere 28.9
1927 Female, age 91, both hemispheres 25.0
2528 Male, age 74, both hemispheres 25.0
2246 Female, age 85, both hemispheres 24.9
2531 Female, age 67, both hemispheres 23.6
2010 Male, age 76, both hemispheres 21.9
Entorhinal gyrus
nTPM: 31.2
2764 Male, age 80, right hemisphere 37.9
2613 Female, age 94, left hemisphere 36.4
1787 Male, age 76, left hemisphere 32.7
1938 Female, age 85, left hemisphere 28.1
2117 Female, age 91, right hemisphere 27.0
2686 Male, age 75, right hemisphere 25.0
Hippocampus, CA1
nTPM: 25.5
2749 Male, age 80, left hemisphere 33.8
2082 Female, age 91, right hemisphere 29.0
2527 Male, age 74, both hemispheres 26.8
1873 Female, age 85, both hemispheres 22.4
2045 Male, age 76, both hemispheres 15.7
Hippocampus, CA2
nTPM: 28.7
2437 Female, age 94, left hemisphere 33.3
1892 Male, age 76, both hemispheres 30.6
2113 Female, age 91, right hemisphere 28.9
2249 Male, age 74, both hemispheres 28.2
1963 Male, age 80, left hemisphere 26.6
1940 Female, age 85, left hemisphere 24.6
Hippocampus, CA3
nTPM: 27.0
2436 Male, age 74, both hemispheres 36.1
2137 Male, age 80, left hemisphere 30.1
2861 Female, age 67, both hemispheres 25.7
1867 Male, age 76, both hemispheres 25.6
1891 Female, age 85, both hemispheres 22.7
2620 Female, age 94, left hemisphere 21.8
Parahippocampal cortex
nTPM: 30.7
2622 Female, age 67, right hemisphere 34.0
1990 Female, age 91, right hemisphere 33.5
1850 Male, age 80, both hemispheres 33.0
2532 Female, age 72, left hemisphere 32.8
2250 Female, age 67, right hemisphere 30.2
2245 Female, age 91, both hemispheres 30.0
1933 Female, age 85, both hemispheres 29.4
2018 Male, age 76, both hemispheres 28.2
2692 Male, age 74, both hemispheres 27.9
2693 Female, age 94, both hemispheres 27.4
Perirhinal gyrus
nTPM: 33.6
1794 Male, age 80, right hemisphere 37.7
1847 Female, age 91, left hemisphere 34.8
2848 Male, age 76, right hemisphere 33.4
2521 Female, age 94, right hemisphere 31.9
1841 Female, age 85, right hemisphere 30.4
Subiculum
nTPM: 28.8
2438 Female, age 94, left hemisphere 34.6
2619 Male, age 74, both hemispheres 31.0
1977 Female, age 85, both hemispheres 30.9
1901 Male, age 80, both hemispheres 26.6
2729 Female, age 91, right hemisphere 25.5
2042 Male, age 76, both hemispheres 23.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 9.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.6
Samples: 255

Max nTPM: 19.0
Min nTPM: 3.7
Std nTPM: 1.9
Median nTPM: 9.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 19.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 15.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 14.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 14.7
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 14.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 14.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 13.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 13.7
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 13.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 13.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 13.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.7
FF:10153-102I9 76 years, female 33.4
FF:10169-103B7 60 years, female 25.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 1.4
Pig sample Sample description nTPM
Subiculum
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.6
Sample A Female 0.8
Sample B Female 0.7
Sample C Male 0.9
Sample D Male 0.6
Dorsal hippocampus
nTPM: 1.4
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.0
Sample A Female 1.7
Sample B Female 1.6
Sample C Male 1.2
Sample D Male 1.0
Entorhinal cortex
nTPM: 0.9
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.7
Sample A Female 0.8
Sample B Female 0.7
Sample C Male 0.9
Sample D Male 1.0
Ventral hippocampus
nTPM: 1.3
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 1.2
Sample C Male 1.2
Sample D Male 2.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 14.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 14.0
Samples: 4

Max nTPM: 16.0
Min nTPM: 11.5
Sample A Male 14.7
Sample B Male 13.6
Sample C Female 11.5
Sample D Female 16.0
Hippocampal formation
nTPM: 13.0
Samples: 4

Max nTPM: 16.8
Min nTPM: 10.7
Sample A Male 10.7
Sample B Male 12.0
Sample C Female 12.3
Sample D Female 16.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
77620239 Antisense, RP_070129_03_B11, Mouse strain C57BL/6J (56 days, male) 1.7

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