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CD74
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  • TISSUE

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  • CD74
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:230.8 nTPM
FANTOM5:926.7 Scaled Tags Per Million
Pig:84.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA010592Antibody CAB002506Antibody CAB079994
Glial cells MediumLowMedium
Neuronal cells Not detectedLowNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 230.8
Samples: 300

Max nTPM: 1079.4
Min nTPM: 22.8
Std nTPM: 177.2
Median nTPM: 186.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1079.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1065.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1060.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 978.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 860.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 764.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 761.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 755.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 687.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 661.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 652.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 619.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 611.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 608.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 587.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 581.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 575.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 564.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 548.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 542.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 538.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 538.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 537.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 536.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 524.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 516.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 513.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 491.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 488.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 478.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 477.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 469.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 467.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 458.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 441.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 429.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 428.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 427.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 420.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 411.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 402.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 388.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 376.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 370.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 362.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 355.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 343.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 342.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 338.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 328.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 326.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 324.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 315.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 313.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 309.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 308.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 304.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 299.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 297.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 297.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 295.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 293.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 292.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 292.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 288.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 285.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 285.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 284.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 283.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 282.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 282.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 276.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 273.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 272.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 268.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 265.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 265.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 264.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 264.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 263.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 257.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 257.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 257.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 257.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 255.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 254.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 254.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 250.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 250.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 250.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 249.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 249.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 248.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 248.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 248.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 245.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 245.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 243.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 242.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 240.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 239.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 238.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 238.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 236.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 235.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 232.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 231.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 231.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 230.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 228.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 227.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 223.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 223.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 222.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 220.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 218.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 217.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 214.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 213.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 212.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 212.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 212.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 212.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 211.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 209.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 208.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 208.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 207.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 207.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 206.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 205.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 205.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 204.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 200.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 198.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 197.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 197.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 194.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 193.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 192.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 192.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 192.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 191.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 191.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 190.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 190.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 189.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 189.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 187.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 186.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 186.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 185.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 183.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 182.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 181.8
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 181.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 180.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 177.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 176.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 175.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 175.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 173.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 170.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 170.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 168.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 168.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 168.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 167.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 167.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 162.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 161.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 160.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 159.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 159.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 159.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 156.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 156.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 154.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 154.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 153.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 153.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 151.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 148.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 148.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 148.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 146.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 144.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 144.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 141.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 141.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 141.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 140.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 140.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 140.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 139.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 139.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 139.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 139.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 138.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 136.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 136.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 134.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 134.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 132.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 132.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 131.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 127.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 127.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 126.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 125.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 124.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 123.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 122.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 122.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 120.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 120.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 118.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 117.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 117.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 116.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 116.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 113.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 113.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 113.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 113.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 113.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 113.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 112.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 112.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 111.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 111.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 109.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 109.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 108.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 108.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 107.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 107.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 104.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 104.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 103.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 103.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 103.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 101.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 100.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 99.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 99.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 97.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 96.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 95.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 95.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 93.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 92.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 92.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 91.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 90.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 90.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 89.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 88.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 88.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 88.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 87.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 87.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 86.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 85.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 85.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 84.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 83.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 83.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 82.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 79.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 78.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 78.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 76.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 74.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 73.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 72.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 72.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 69.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 69.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 67.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 67.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 65.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 64.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 63.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 63.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 62.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 61.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 60.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 59.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 58.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 58.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 56.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 55.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 55.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 55.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 50.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 48.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 46.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 27.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 22.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

926.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 926.7
FF:10164-103B2 76 years, female 926.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.5
Pig sample Sample description nTPM
Caudate
nTPM: 84.5
Samples: 4

Max nTPM: 87.9
Min nTPM: 80.6
Sample A Female 80.6
Sample B Female 86.5
Sample C Male 82.9
Sample D Male 87.9

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