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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
500.7
Sample id
Sample description
nTPM
Amygdala nTPM: 344.8
2814
Male, age 76, right hemisphere
586.3
2517
Female, age 94, left hemisphere
385.6
1987
Female, age 91, left hemisphere
360.0
2514
Male, age 75, right hemisphere
206.1
2695
Female, age 67, right hemisphere
186.0
Basal amygdala nTPM: 480.6
2685
Female, age 94, left hemisphere
676.1
2243
Female, age 91, right hemisphere
562.4
2110
Male, age 80, left hemisphere
528.6
1955
Male, age 76, both hemispheres
501.0
2827
Female, age 67, right hemisphere
344.1
2609
Male, age 75, right hemisphere
271.1
Central amygdala nTPM: 391.6
1905
Male, age 76, both hemispheres
585.6
2826
Female, age 94, left hemisphere
417.9
2701
Female, age 91, right hemisphere
365.6
2239
Male, age 80, left hemisphere
362.1
2515
Male, age 75, right hemisphere
226.8
Corticomedial amygdala nTPM: 500.7
2242
Female, age 91, right hemisphere
655.7
2829
Male, age 80, left hemisphere
635.0
2429
Female, age 94, left hemisphere
519.1
2240
Male, age 76, both hemispheres
483.0
2535
Female, age 67, right hemisphere
468.0
2428
Male, age 75, right hemisphere
243.1
Lateral amygdala nTPM: 331.4
2534
Female, age 94, left hemisphere
449.8
1883
Male, age 76, both hemispheres
441.4
2255
Female, age 91, right hemisphere
439.0
2256
Male, age 80, left hemisphere
294.7
2830
Female, age 67, right hemisphere
193.0
2516
Male, age 75, right hemisphere
170.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
210.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 210.1
Samples: 181
Max nTPM: 549.9
Min nTPM: 43.1
Std nTPM: 104.2
Median nTPM: 193.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
549.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
524.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
492.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
449.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
445.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
431.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
426.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
422.5
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
409.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
404.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
398.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
387.8
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
387.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
387.3
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
380.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
379.7
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
377.5
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
367.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
361.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
359.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
358.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
357.5
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
353.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
348.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
330.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
330.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
326.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
323.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
322.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
322.2
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
314.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
312.3
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
307.9
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
300.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
299.4
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
291.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
289.3
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
284.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
282.8
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
280.6
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
278.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
277.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
274.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
271.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
268.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
268.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
268.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
266.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
264.6
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
264.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
261.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
256.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
254.0
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
251.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
250.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
250.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
250.2
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
248.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
246.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
246.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
245.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
244.8
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
244.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
237.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
236.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
235.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
232.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
230.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
229.0
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
228.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
224.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
220.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
219.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
218.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
217.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
212.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
212.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
211.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
210.8
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
208.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
207.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
207.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
207.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
203.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
197.2
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
197.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
197.1
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
195.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
195.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
193.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
193.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
189.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
188.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
186.3
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
186.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
185.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
183.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
182.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
180.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
179.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
176.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
174.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
174.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
174.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
170.2
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
169.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
168.8
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
167.3
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
160.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
160.3
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
159.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
159.6
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
158.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
156.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
156.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
155.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
155.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
155.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
155.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
154.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
154.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
148.7
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
147.5
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
146.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
146.3
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
144.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
144.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
140.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
137.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
134.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
132.9
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
132.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
131.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
129.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
129.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
127.7
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
125.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
125.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
124.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
121.4
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
119.4
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
118.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
118.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
116.3
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
115.8
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
115.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
112.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
111.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
111.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
110.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
109.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
108.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
107.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
107.5
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
106.3
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
106.3
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
100.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
99.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
98.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
95.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
94.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
93.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
93.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
92.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
87.6
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
87.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
85.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
80.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
79.7
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
77.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
76.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
76.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
74.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
72.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
69.2
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
69.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
65.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
65.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
46.2
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
45.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
43.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
194.1
Pig sample
Sample description
nTPM
Amygdala nTPM: 194.1
Samples: 4
Max nTPM: 301.1
Min nTPM: 120.9
Sample A
Female
301.1
Sample B
Female
120.9
Sample C
Male
137.5
Sample D
Male
216.9
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
505.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 505.3
Samples: 4
Max nTPM: 527.5
Min nTPM: 476.8
Sample A
Male
527.0
Sample B
Male
476.8
Sample C
Female
527.5
Sample D
Female
490.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
