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  • TISSUE

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BRAIN CAUDATE Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:580.9 nTPM
FANTOM5:1623.7 Scaled Tags Per Million
Pig:407.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA023676
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

580.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 580.9
Samples: 300

Max nTPM: 1704.5
Min nTPM: 21.3
Std nTPM: 358.7
Median nTPM: 532.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1704.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1606.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1555.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1514.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1482.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1299.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1297.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1294.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1294.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1266.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1254.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1236.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1230.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1216.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1215.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1205.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1172.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1169.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1169.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1168.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1162.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1162.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1162.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1150.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1149.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1148.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1142.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1121.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1121.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1112.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1103.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1102.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1087.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1084.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1083.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1081.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1063.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1063.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1047.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1042.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1037.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1018.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1010.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1002.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1002.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 990.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 989.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 989.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 979.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 977.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 976.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 969.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 959.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 946.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 938.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 904.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 903.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 901.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 901.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 900.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 894.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 894.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 889.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 881.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 877.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 856.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 854.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 852.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 850.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 845.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 845.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 842.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 837.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 836.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 834.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 831.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 829.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 827.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 822.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 822.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 811.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 808.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 806.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 792.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 788.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 788.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 776.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 770.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 766.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 765.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 755.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 754.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 753.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 750.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 739.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 732.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 728.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 727.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 721.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 713.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 709.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 706.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 704.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 701.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 700.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 700.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 699.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 699.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 695.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 694.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 689.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 683.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 669.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 668.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 665.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 664.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 663.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 660.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 658.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 656.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 653.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 638.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 638.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 631.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 630.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 622.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 616.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 616.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 609.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 608.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 606.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 605.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 603.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 599.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 596.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 595.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 580.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 571.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 571.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 569.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 567.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 563.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 560.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 560.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 557.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 545.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 544.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 541.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 534.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 534.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 530.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 523.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 519.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 519.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 518.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 516.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 514.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 514.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 508.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 508.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 506.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 504.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 504.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 504.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 503.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 498.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 495.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 486.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 482.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 477.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 474.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 470.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 465.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 463.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 463.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 460.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 455.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 455.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 450.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 444.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 443.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 443.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 442.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 440.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 431.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 428.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 425.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 420.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 419.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 418.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 417.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 413.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 404.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 404.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 397.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 387.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 387.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 381.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 378.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 357.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 356.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 351.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 349.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 343.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 342.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 329.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 328.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 322.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 321.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 320.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 314.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 314.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 312.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 310.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 303.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 292.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 282.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 281.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 280.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 279.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 275.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 273.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 270.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 265.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 262.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 262.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 262.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 262.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 261.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 258.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 251.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 241.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 240.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 240.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 238.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 235.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 234.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 227.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 227.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 224.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 224.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 221.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 220.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 219.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 219.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 212.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 211.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 207.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 201.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 199.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 198.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 198.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 187.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 186.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 182.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 179.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 175.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 172.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 172.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 172.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 170.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 167.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 167.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 166.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 162.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 160.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 158.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 154.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 153.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 145.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 142.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 141.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 138.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 134.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 131.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 130.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 128.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 126.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 126.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 123.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 116.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 115.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 111.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 109.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 109.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 105.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 100.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 95.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 79.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 75.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 72.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 65.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 62.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 61.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 59.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 57.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 47.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 45.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 39.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 21.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1623.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1623.7
FF:10164-103B2 76 years, female 1623.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

407.6
Pig sample Sample description nTPM
Caudate
nTPM: 407.7
Samples: 4

Max nTPM: 501.0
Min nTPM: 271.5
Sample A Female 271.5
Sample B Female 426.1
Sample C Male 501.0
Sample D Male 432.0

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