MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.9 nTPM
HPA Brain:150.8 nTPM
GTEx:106.9 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:116.9 nTPM
Mouse:99.8 nTPM
Allen mouse:4.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 150.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.5
2586 Male, age 75, left hemisphere 118.7
1827 Male, age 72, unknown 110.9
2828 Female, age 72, unknown 106.8
2019 Male, age 18, unknown 97.1
2666 Male, age 74, left hemisphere 96.1
2219 Male, age 76, both hemispheres 91.8
2411 Female, age 72, unknown 84.4
1870 Female, age 42, unknown 83.9
1833 Male, age 53, unknown 80.1
1830 Male, age 51, unknown 75.4
Dorsal raphe nucleus
nTPM: 134.3
2298 Female, age 72, unknown 194.4
2047 Male, age 72, unknown 138.9
2016 Female, age 72, unknown 138.6
1828 Male, age 53, unknown 105.5
2750 Male, age 76, both hemispheres 94.4
Inferior colliculus
nTPM: 105.1
2097 Female, age 72, unknown 117.1
1848 Female, age 42, unknown 102.8
1890 Male, age 53, unknown 101.9
2849 Male, age 72, unknown 98.5
Median raphe nucleus
nTPM: 114.2
2220 Male, age 76, midline 114.2
Periaquaductal grey, anterior
nTPM: 135.3
1795 Male, age 51, unknown 151.1
2502 Female, age 75, unknown 145.5
1947 Male, age 18, unknown 109.5
Periaquaductal grey, dorsal
nTPM: 140.5
1840 Male, age 53, unknown 179.0
2850 Male, age 76, both hemispheres 152.6
2464 Female, age 72, unknown 119.5
1831 Male, age 72, unknown 110.9
Periaquaductal grey, lateral
nTPM: 150.8
2272 Male, age 74, both hemispheres 165.2
2140 Male, age 76, both hemispheres 153.6
2053 Male, age 18, unknown 133.7
Pretectal area
nTPM: 134.5
2273 Male, age 74, both hemispheres 198.9
2224 Female, age 72, unknown 155.5
1816 Male, age 51, unknown 148.6
1944 Female, age 72, unknown 135.3
1817 Female, age 42, unknown 133.3
1815 Male, age 53, unknown 133.2
2007 Male, age 72, unknown 128.8
2407 Male, age 75, both hemispheres 121.8
2667 Female, age 75, unknown 117.8
2825 Male, age 18, unknown 107.0
2316 Male, age 76, right hemisphere 98.9
Red nucleus
nTPM: 77.3
2785 Male, age 18, unknown 106.0
2725 Female, age 75, unknown 87.1
1821 Female, age 72, unknown 79.9
1904 Male, age 53, unknown 78.8
2584 Male, age 75, left hemisphere 78.2
2769 Male, age 72, unknown 78.0
2227 Male, age 72, unknown 77.5
2503 Female, age 72, unknown 77.4
1954 Female, age 42, unknown 74.4
1865 Male, age 51, unknown 69.1
2823 Male, age 76, right hemisphere 61.6
2588 Male, age 74, left hemisphere 59.8
Substantia nigra
nTPM: 120.5
1916 Female, age 42, unknown 151.6
1851 Male, age 51, unknown 137.4
2241 Male, age 72, unknown 131.3
2699 Male, age 18, unknown 127.6
2590 Female, age 75, unknown 120.8
1889 Female, age 72, unknown 112.1
1941 Male, age 53, unknown 108.2
2583 Male, age 75, right hemisphere 108.2
2665 Male, age 74, both hemispheres 107.7
2409 Female, age 72, unknown 100.2
Superior colliculus
nTPM: 115.3
2664 Male, age 75, both hemispheres 164.4
1796 Male, age 53, unknown 130.0
2087 Female, age 72, unknown 128.6
2261 Male, age 18, unknown 125.6
2587 Male, age 74, left hemisphere 118.2
1995 Male, age 72, unknown 107.5
1839 Male, age 51, unknown 105.6
2668 Female, age 75, unknown 101.9
1913 Female, age 42, unknown 89.4
1895 Male, age 76, right hemisphere 82.4
Ventral tegmental area
nTPM: 114.6
2410 Female, age 72, unknown 127.0
1915 Female, age 42, unknown 125.1
2021 Male, age 53, unknown 120.7
1942 Male, age 51, unknown 115.3
2218 Male, age 76, both hemispheres 107.8
2223 Female, age 72, unknown 91.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 106.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.9
Samples: 183

Max nTPM: 263.1
Min nTPM: 20.9
Std nTPM: 37.5
Median nTPM: 103.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 263.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 237.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 216.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 208.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 195.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 194.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 186.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 185.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 179.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 169.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 162.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 116.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.1
Samples: 4

Max nTPM: 81.7
Min nTPM: 38.2
Sample A Female 77.6
Sample B Female 81.7
Sample C Male 70.8
Sample D Male 38.2
Midbrain
nTPM: 62.8
Samples: 4

Max nTPM: 66.7
Min nTPM: 59.3
Sample A Female 63.5
Sample B Female 66.7
Sample C Male 61.7
Sample D Male 59.3
Periaqueductal gray
nTPM: 116.9
Samples: 3

Max nTPM: 149.2
Min nTPM: 90.9
Sample B Female 90.9
Sample C Male 149.2
Sample D Male 110.5
Superior colliculi
nTPM: 51.0
Samples: 4

Max nTPM: 61.8
Min nTPM: 38.5
Sample A Female 61.8
Sample B Female 45.3
Sample C Male 38.5
Sample D Male 58.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 99.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.8
Samples: 4

Max nTPM: 101.6
Min nTPM: 98.3
Sample A Male 100.4
Sample B Male 101.6
Sample C Female 98.3
Sample D Female 99.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
2219 Antisense, RP_040604_01_A03, Mouse strain C57BL/6J (56 days, male) 4.5
2218 Antisense, RP_040604_01_A03, Mouse strain C57BL/6J (56 days, male) 1.4

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