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  • RNH1
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:153.3 nTPM
GTEx:153.3 nTPM
FANTOM5:138.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA039223Antibody HPA040781
Squamous epithelial cells MediumMedium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 153.3
Samples: 170

Max nTPM: 394.4
Min nTPM: 68.9
Std nTPM: 46.2
Median nTPM: 143.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 394.4
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 302.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 286.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 273.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 256.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 236.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 234.0
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 232.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 230.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 230.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 226.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 216.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 216.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 212.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 210.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 210.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 206.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 206.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 203.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 197.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 197.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 197.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 197.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 195.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 195.6
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 194.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 193.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 193.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 191.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 191.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 190.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 188.2
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 186.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 185.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 185.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 182.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 182.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 181.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 181.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 181.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 180.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 180.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 179.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 179.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 179.6
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 178.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 178.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 177.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 176.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 174.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 173.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 173.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 172.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 171.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 171.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 171.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 170.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 169.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 168.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 167.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 166.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 166.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 166.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 164.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 163.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 163.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 162.9
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 162.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 161.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 159.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 157.8
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 156.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 155.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 154.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 153.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 152.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 151.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 150.6
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 150.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 149.8
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 148.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 145.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 144.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 144.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 144.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 143.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 143.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 143.0
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 142.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 142.2
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 142.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 141.7
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 141.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 141.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 141.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 140.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 140.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 140.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 140.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 140.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 140.0
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 139.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 139.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 138.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 137.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 137.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 137.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 137.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 135.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 134.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 134.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 134.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 133.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 132.2
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 131.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 130.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 130.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 129.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 129.3
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 128.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 126.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 126.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 126.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 126.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 124.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 124.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 123.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 123.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 122.9
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 122.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 121.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 121.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 121.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 119.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 118.5
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 118.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 116.9
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 116.4
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 115.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 114.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 113.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 112.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 111.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 111.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 111.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 107.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 106.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 105.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 103.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 100.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 99.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 98.4
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 97.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 95.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 95.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 95.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 93.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 92.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 91.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 91.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 90.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 86.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 85.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 84.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 83.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 79.1
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 78.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 75.0
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 70.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 68.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

138.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 138.4
FF:10204-103F6 68 years, female 138.4

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