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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:50.9 nTPM
HPA:50.9 nTPM
GTEx:27.2 nTPM
FANTOM5:142.9 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.9
overview
Male, age 65
Small intestine sample 232
nTPM: 51.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 60.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 42
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 49.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 27.2
Samples: 207

Max nTPM: 82.5
Min nTPM: 7.8
Std nTPM: 17.2
Median nTPM: 20.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 82.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 82.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 76.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 72.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 70.9
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 66.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 65.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 64.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 63.2
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 62.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 62.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 62.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 61.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 59.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 59.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 59.1
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 59.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 58.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 57.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 56.6
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 55.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 54.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 53.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 53.1
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 53.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 52.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 50.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 50.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 49.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 49.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 49.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 48.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 47.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 46.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 44.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 44.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 43.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 43.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 41.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 41.6
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 41.1
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 40.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 40.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 40.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 40.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 40.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 39.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 39.2
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 39.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 38.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 38.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 37.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 37.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 37.7
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 37.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 37.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 37.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 35.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 35.4
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 35.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 34.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 33.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 33.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 32.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 32.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 31.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 30.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 30.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 30.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 30.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 29.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 29.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 28.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 27.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 27.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 27.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 27.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 26.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 25.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 25.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 25.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 25.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 24.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 24.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 24.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 24.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 24.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 24.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 23.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 23.0
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 22.9
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 22.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 22.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 22.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 22.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 22.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 22.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 21.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 21.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 21.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 21.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 20.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 20.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 20.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 19.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 19.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 19.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 18.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 18.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 18.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 18.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 18.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 18.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 17.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 17.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 17.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 17.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 17.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 17.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 17.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 17.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 17.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 17.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 16.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 16.7
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 16.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 16.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 16.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 16.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 16.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 16.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 16.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 16.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 15.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 15.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 15.7
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 15.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 15.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 15.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 14.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 14.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 14.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 14.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 14.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 14.4
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 14.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 14.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 14.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 14.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 14.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 13.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 13.9
GTEX-1192X-2526-SM-59868 50-59 years, male 13.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 13.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 13.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 13.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 13.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 13.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 13.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 13.3
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 13.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 13.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 13.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 13.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 13.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 12.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 12.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 12.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 12.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 12.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 12.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 12.8
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 12.8
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 12.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 12.5
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 12.5
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 12.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 12.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 12.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 12.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 11.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 11.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 11.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 11.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 11.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 11.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 11.4
GTEX-178AV-1226-SM-GOR11 40-49 years, male 11.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 11.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 11.2
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 10.9
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 10.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 10.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 10.5
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 10.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 10.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 10.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 9.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 9.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 9.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 9.6
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 9.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 9.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 9.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 8.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 7.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 7.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 142.9
FF:10024-101D6 15,40,85 years, mixed 142.9

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