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GPM6B
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • GPM6B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:346.8 nTPM
FANTOM5:686.0 Scaled Tags Per Million
Pig:668.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002913
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

346.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 346.8
Samples: 300

Max nTPM: 778.2
Min nTPM: 103.7
Std nTPM: 82.6
Median nTPM: 338.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 778.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 626.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 581.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 557.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 552.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 530.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 528.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 516.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 511.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 509.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 506.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 498.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 498.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 492.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 488.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 487.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 485.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 483.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 480.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 477.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 475.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 470.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 470.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 464.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 458.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 452.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 452.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 452.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 451.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 451.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 447.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 445.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 444.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 442.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 441.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 441.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 440.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 440.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 439.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 439.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 438.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 437.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 437.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 437.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 436.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 435.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 433.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 431.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 429.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 429.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 427.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 425.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 423.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 422.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 421.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 420.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 419.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 416.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 414.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 409.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 409.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 406.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 403.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 400.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 399.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 397.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 396.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 396.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 396.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 395.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 395.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 393.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 392.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 390.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 390.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 390.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 389.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 389.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 389.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 388.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 388.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 387.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 386.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 383.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 382.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 382.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 381.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 380.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 380.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 380.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 378.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 378.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 377.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 377.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 377.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 375.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 375.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 375.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 374.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 372.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 371.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 371.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 368.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 367.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 367.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 367.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 367.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 367.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 366.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 365.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 365.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 364.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 364.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 363.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 363.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 362.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 362.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 362.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 361.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 361.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 360.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 359.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 359.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 358.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 357.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 357.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 357.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 356.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 356.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 354.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 354.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 353.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 352.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 348.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 348.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 346.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 346.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 343.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 342.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 342.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 341.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 341.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 341.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 341.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 340.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 339.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 339.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 338.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 338.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 338.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 338.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 337.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 336.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 336.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 336.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 335.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 335.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 334.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 333.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 333.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 332.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 332.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 331.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 331.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 330.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 330.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 327.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 326.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 326.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 326.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 325.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 324.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 324.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 323.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 323.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 323.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 323.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 322.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 321.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 321.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 319.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 319.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 319.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 318.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 318.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 317.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 317.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 317.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 317.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 316.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 316.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 314.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 313.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 312.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 312.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 311.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 311.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 311.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 310.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 310.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 310.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 309.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 308.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 307.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 307.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 303.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 303.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 300.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 298.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 298.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 297.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 297.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 296.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 296.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 296.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 296.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 295.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 295.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 294.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 294.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 294.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 294.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 292.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 292.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 290.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 290.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 290.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 289.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 289.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 289.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 289.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 288.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 288.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 287.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 286.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 286.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 286.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 285.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 284.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 282.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 282.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 281.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 280.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 277.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 277.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 274.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 274.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 274.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 273.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 272.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 271.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 271.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 271.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 270.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 269.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 269.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 268.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 267.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 266.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 266.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 266.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 266.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 264.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 264.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 263.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 261.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 260.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 259.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 257.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 256.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 255.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 255.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 255.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 253.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 250.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 244.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 244.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 242.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 237.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 235.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 234.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 233.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 232.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 230.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 229.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 228.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 227.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 216.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 213.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 208.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 204.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 201.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 201.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 198.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 189.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 188.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 182.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 177.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 154.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 103.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

686.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 686.0
FF:10164-103B2 76 years, female 686.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

668.1
Pig sample Sample description nTPM
Caudate
nTPM: 668.1
Samples: 4

Max nTPM: 819.2
Min nTPM: 587.7
Sample A Female 587.7
Sample B Female 628.9
Sample C Male 819.2
Sample D Male 636.5

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