MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:364.8 nTPM
HPA Brain:639.7 nTPM
GTEx:364.8 nTPM
FANTOM5:1491.2 Scaled Tags Per Million
Pig:723.0 nTPM
Mouse:425.5 nTPM
Allen mouse:8.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 639.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 525.5
1870 Female, age 42, unknown 701.3
2019 Male, age 18, unknown 634.5
2411 Female, age 72, unknown 614.5
2828 Female, age 72, unknown 608.5
1833 Male, age 53, unknown 572.5
1830 Male, age 51, unknown 568.3
1827 Male, age 72, unknown 441.6
2219 Male, age 76, both hemispheres 382.0
2586 Male, age 75, left hemisphere 380.0
2666 Male, age 74, left hemisphere 352.3
Dorsal raphe nucleus
nTPM: 551.1
2750 Male, age 76, both hemispheres 704.0
2016 Female, age 72, unknown 603.0
2298 Female, age 72, unknown 568.4
1828 Male, age 53, unknown 461.9
2047 Male, age 72, unknown 418.1
Inferior colliculus
nTPM: 427.5
2097 Female, age 72, unknown 450.0
1890 Male, age 53, unknown 449.7
1848 Female, age 42, unknown 446.5
2849 Male, age 72, unknown 364.1
Median raphe nucleus
nTPM: 420.3
2220 Male, age 76, midline 420.3
Periaquaductal grey, anterior
nTPM: 445.7
2502 Female, age 75, unknown 481.0
1795 Male, age 51, unknown 429.2
1947 Male, age 18, unknown 427.0
Periaquaductal grey, dorsal
nTPM: 433.2
2464 Female, age 72, unknown 472.2
2850 Male, age 76, both hemispheres 443.3
1831 Male, age 72, unknown 431.3
1840 Male, age 53, unknown 385.8
Periaquaductal grey, lateral
nTPM: 461.3
2053 Male, age 18, unknown 486.1
2272 Male, age 74, both hemispheres 464.6
2140 Male, age 76, both hemispheres 433.2
Pretectal area
nTPM: 461.5
2273 Male, age 74, both hemispheres 638.0
2316 Male, age 76, right hemisphere 564.7
2407 Male, age 75, both hemispheres 529.5
2667 Female, age 75, unknown 515.6
1815 Male, age 53, unknown 490.1
2224 Female, age 72, unknown 461.5
2825 Male, age 18, unknown 429.8
1817 Female, age 42, unknown 423.6
2007 Male, age 72, unknown 381.7
1944 Female, age 72, unknown 331.0
1816 Male, age 51, unknown 311.3
Red nucleus
nTPM: 639.7
1904 Male, age 53, unknown 793.7
2227 Male, age 72, unknown 774.4
2769 Male, age 72, unknown 761.9
1865 Male, age 51, unknown 745.5
1821 Female, age 72, unknown 744.4
1954 Female, age 42, unknown 691.8
2823 Male, age 76, right hemisphere 669.4
2785 Male, age 18, unknown 647.9
2503 Female, age 72, unknown 641.5
2588 Male, age 74, left hemisphere 420.1
2725 Female, age 75, unknown 411.3
2584 Male, age 75, left hemisphere 374.2
Substantia nigra
nTPM: 426.8
1851 Male, age 51, unknown 507.4
2699 Male, age 18, unknown 479.5
2590 Female, age 75, unknown 455.7
2583 Male, age 75, right hemisphere 449.2
1889 Female, age 72, unknown 446.8
2409 Female, age 72, unknown 446.4
1916 Female, age 42, unknown 400.5
1941 Male, age 53, unknown 399.9
2241 Male, age 72, unknown 394.4
2665 Male, age 74, both hemispheres 288.0
Superior colliculus
nTPM: 506.5
1913 Female, age 42, unknown 721.6
1995 Male, age 72, unknown 715.8
2668 Female, age 75, unknown 558.9
2587 Male, age 74, left hemisphere 519.6
1895 Male, age 76, right hemisphere 479.4
1839 Male, age 51, unknown 467.3
2664 Male, age 75, both hemispheres 435.1
1796 Male, age 53, unknown 419.2
2087 Female, age 72, unknown 400.5
2261 Male, age 18, unknown 348.0
Ventral tegmental area
nTPM: 526.2
2223 Female, age 72, unknown 728.2
2410 Female, age 72, unknown 531.3
2021 Male, age 53, unknown 514.9
1942 Male, age 51, unknown 512.5
1915 Female, age 42, unknown 435.6
2218 Male, age 76, both hemispheres 434.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 364.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 364.8
Samples: 183

Max nTPM: 794.8
Min nTPM: 83.9
Std nTPM: 127.7
Median nTPM: 340.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 794.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 749.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 743.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 724.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 680.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 679.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 656.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 653.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 627.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 575.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 570.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1491.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1491.2
FF:10158-103A5 76 years, female 1491.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 723.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 620.2
Samples: 4

Max nTPM: 840.5
Min nTPM: 470.6
Sample A Female 612.0
Sample B Female 470.6
Sample C Male 557.8
Sample D Male 840.5
Midbrain
nTPM: 723.0
Samples: 4

Max nTPM: 1371.6
Min nTPM: 413.9
Sample A Female 1371.6
Sample B Female 649.1
Sample C Male 457.2
Sample D Male 413.9
Periaqueductal gray
nTPM: 542.0
Samples: 3

Max nTPM: 619.3
Min nTPM: 495.7
Sample B Female 619.3
Sample C Male 510.9
Sample D Male 495.7
Superior colliculi
nTPM: 489.2
Samples: 4

Max nTPM: 586.1
Min nTPM: 263.1
Sample A Female 562.6
Sample B Female 263.1
Sample C Male 545.0
Sample D Male 586.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 425.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 425.5
Samples: 4

Max nTPM: 432.3
Min nTPM: 419.9
Sample A Male 426.7
Sample B Male 423.0
Sample C Female 432.3
Sample D Female 419.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
74357593 Antisense, RP_060117_01_A08, Mouse strain C57BL/6J (56 days, male) 8.3
544520 Antisense, RP_040324_01_G06, Mouse strain C57BL/6J (56 days, male) 8.0

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