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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:227.7 nTPM
FANTOM5:341.6 Scaled Tags Per Million
Pig:63.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA038149Antibody HPA038150
Glial cells HighMedium
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 227.7
Samples: 300

Max nTPM: 1116.8
Min nTPM: 88.4
Std nTPM: 114.2
Median nTPM: 197.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1116.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 785.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 678.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 612.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 576.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 560.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 506.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 499.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 488.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 485.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 477.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 460.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 452.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 451.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 450.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 430.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 419.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 413.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 410.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 405.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 403.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 403.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 400.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 397.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 396.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 395.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 393.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 383.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 380.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 374.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 370.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 365.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 361.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 357.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 351.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 348.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 344.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 339.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 337.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 331.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 329.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 324.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 319.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 316.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 315.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 314.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 310.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 310.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 309.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 309.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 308.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 302.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 301.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 295.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 295.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 291.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 289.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 288.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 284.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 278.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 278.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 278.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 275.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 275.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 273.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 271.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 270.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 269.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 269.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 268.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 268.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 265.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 265.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 262.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 261.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 261.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 260.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 258.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 257.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 257.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 256.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 255.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 255.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 255.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 254.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 250.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 250.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 250.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 249.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 248.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 244.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 242.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 242.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 242.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 236.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 236.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 236.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 235.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 234.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 229.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 229.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 229.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 229.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 228.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 227.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 227.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 224.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 223.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 223.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 223.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 223.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 222.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 222.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 222.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 220.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 219.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 218.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 218.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 217.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 217.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 215.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 214.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 214.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 213.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 212.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 212.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 212.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 212.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 208.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 208.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 208.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 208.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 207.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 207.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 205.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 204.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 203.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 203.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 202.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 202.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 202.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 201.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 201.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 201.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 201.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 200.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 199.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 199.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 198.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 198.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 197.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 196.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 196.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 196.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 196.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 195.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 194.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 194.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 194.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 194.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 194.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 193.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 192.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 192.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 191.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 190.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 188.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 187.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 186.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 185.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 185.7
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 185.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 185.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 185.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 184.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 184.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 184.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 182.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 181.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 180.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 179.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 179.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 176.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 176.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 176.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 175.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 174.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 173.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 172.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 172.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 170.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 169.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 168.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 168.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 168.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 168.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 167.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 167.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 167.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 165.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 165.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 165.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 164.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 163.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 163.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 162.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 161.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 161.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 161.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 161.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 161.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 161.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 160.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 160.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 160.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 159.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 159.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 157.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 156.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 156.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 155.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 155.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 154.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 154.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 154.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 153.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 153.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 153.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 153.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 153.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 153.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 152.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 150.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 150.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 148.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 148.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 148.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 147.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 146.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 146.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 146.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 145.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 145.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 144.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 144.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 143.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 143.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 143.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 143.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 143.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 143.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 143.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 142.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 142.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 142.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 141.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 141.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 139.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 138.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 137.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 137.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 136.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 135.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 135.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 134.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 133.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 133.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 132.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 132.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 132.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 131.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 131.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 130.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 130.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 129.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 129.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 129.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 129.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 128.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 128.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 128.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 124.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 123.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 123.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 122.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 121.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 121.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 121.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 120.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 120.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 116.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 114.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 114.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 113.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 110.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 108.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 104.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 103.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 92.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 88.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

341.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 341.6
FF:10164-103B2 76 years, female 341.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.9
Pig sample Sample description nTPM
Caudate
nTPM: 63.9
Samples: 4

Max nTPM: 70.5
Min nTPM: 60.8
Sample A Female 60.9
Sample B Female 63.5
Sample C Male 70.5
Sample D Male 60.8

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