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  • GUCA1A
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:703.2 nTPM
GTEx:703.2 nTPM
FANTOM5:259.7 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA005561
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Medium

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA075056
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

703.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 703.2
Samples: 105

Max nTPM: 1439.6
Min nTPM: 97.4
Std nTPM: 297.2
Median nTPM:
352_1 62 years, male 1439.6
319_1 81 years, male 1365.3
394_1 75 years, female 1277.0
377_1 82 years, female 1229.9
425_1 59 years, female 1225.0
163_1 78 years, male 1184.6
321_1 62 years, female 1175.2
218_1 71 years, female 1172.3
355_1 70 years, female 1104.7
389_1 86 years, female 1071.0
384_1 83 years, male 1052.2
172_1 72 years, female 1033.9
406_1 79 years, male 1030.0
375_1 74 years, female 1016.8
243_1 75 years, male 1012.3
356_1 87 years, female 1005.8
350_1 84 years, female 1004.7
246_1 77 years, male 1003.0
6_1 73 years, female 1002.0
386_1 76 years, male 997.9
354_1 81 years, female 981.4
115_1 83 years, male 979.7
503_1 68 years, male 964.5
347_1 72 years, male 964.2
189_1 76 years, male 945.5
376_1 75 years, female 931.5
318_1 68 years, male 922.4
177_1 74 years, male 919.7
526_1 61 years, male 913.1
349_1 83 years, male 905.1
447_1 81 years, male 880.5
404_1 82 years, female 869.6
517_1 88 years, male 868.3
468_1 89 years, male 862.9
251_1 78 years, male 852.4
480_1 63 years, male 835.9
405_1 91 years, male 829.1
379_1 60 years, male 827.0
291_1 76 years, male 820.2
292_1 71 years, male 812.6
237_1 82 years, male 810.0
320_1 89 years, female 803.3
153_1 70 years, female 800.3
229_1 69 years, female 784.8
316_1 62 years, male 778.7
351_1 91 years, male 763.3
335_1 73 years, female 745.0
322_1 76 years, male 739.3
286_1 68 years, female 731.2
265_1 87 years, male 728.6
254_1 77 years, female 726.4
126_1 63 years, male 726.3
35_1 74 years, female 696.3
99_1 64 years, male 689.2
9_1 66 years, female 686.2
217_1 76 years, male 681.7
293_1 68 years, female 677.9
18_1 88 years, male 671.5
4_1 88 years, female 669.5
173_1 67 years, male 658.9
295_1 61 years, female 652.5
353_1 82 years, female 649.8
348_1 84 years, male 645.4
396_1 62 years, male 641.2
264_1 73 years, female 630.1
518_1 75 years, female 628.9
2_1 77 years, female 619.6
452_1 88 years, female 588.4
145_1 84 years, male 587.3
506_1 65 years, male 568.5
317_1 60 years, male 565.6
17_1 71 years, male 560.9
42_1 85 years, male 543.0
266_1 85 years, male 539.0
137_1 83 years, male 525.4
109_1 81 years, female 493.0
120_1 70 years, female 471.0
324_1 76 years, male 464.2
142_1 61 years, female 451.5
311_1 78 years, male 451.4
117_1 61 years, male 450.9
307_1 66 years, female 428.9
139_1 64 years, female 422.9
162_1 79 years, female 418.6
81_1 67 years, male 397.7
499_1 55 years, female 392.7
314_1 67 years, male 389.5
315_1 62 years, female 369.5
288_1 66 years, female 363.4
41_1 94 years, female 352.5
32_1 67 years, male 333.2
313_1 79 years, female 332.4
414_1 84 years, female 320.7
415_1 77 years, female 320.3
43_1 64 years, female 314.8
466_1 57 years, female 300.1
119_1 70 years, female 297.5
89_1 63 years, male 260.4
501_1 88 years, male 227.4
413_1 59 years, female 222.1
149_1 88 years, male 201.6
495_1 57 years, female 190.6
308_1 70 years, female 175.9
490_1 67 years, female 118.3
491_1 89 years, female 97.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

259.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 259.7
FF:10030-101E3 24-65 years, mixed 259.7

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