MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.6 nTPM
HPA Brain:45.2 nTPM
GTEx:10.6 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:35.0 nTPM
Mouse:7.4 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.0
2586 Male, age 75, left hemisphere 54.2
2219 Male, age 76, both hemispheres 51.2
2828 Female, age 72, unknown 45.0
1830 Male, age 51, unknown 44.3
1833 Male, age 53, unknown 42.1
1827 Male, age 72, unknown 41.8
1870 Female, age 42, unknown 40.9
2411 Female, age 72, unknown 40.8
2019 Male, age 18, unknown 36.5
2666 Male, age 74, left hemisphere 33.0
Dorsal raphe nucleus
nTPM: 36.6
2750 Male, age 76, both hemispheres 42.5
2016 Female, age 72, unknown 39.7
1828 Male, age 53, unknown 36.6
2047 Male, age 72, unknown 32.8
2298 Female, age 72, unknown 31.5
Inferior colliculus
nTPM: 42.4
1848 Female, age 42, unknown 45.2
2849 Male, age 72, unknown 44.4
1890 Male, age 53, unknown 41.7
2097 Female, age 72, unknown 38.3
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Periaquaductal grey, anterior
nTPM: 38.5
1795 Male, age 51, unknown 39.0
2502 Female, age 75, unknown 38.5
1947 Male, age 18, unknown 38.1
Periaquaductal grey, dorsal
nTPM: 39.0
1840 Male, age 53, unknown 41.5
2464 Female, age 72, unknown 40.8
1831 Male, age 72, unknown 40.3
2850 Male, age 76, both hemispheres 33.5
Periaquaductal grey, lateral
nTPM: 38.7
2053 Male, age 18, unknown 42.6
2140 Male, age 76, both hemispheres 39.3
2272 Male, age 74, both hemispheres 34.3
Pretectal area
nTPM: 40.3
2667 Female, age 75, unknown 46.3
1815 Male, age 53, unknown 46.0
2825 Male, age 18, unknown 40.6
2316 Male, age 76, right hemisphere 40.2
1817 Female, age 42, unknown 40.1
1944 Female, age 72, unknown 40.1
2007 Male, age 72, unknown 39.9
2273 Male, age 74, both hemispheres 38.4
2407 Male, age 75, both hemispheres 38.4
1816 Male, age 51, unknown 38.2
2224 Female, age 72, unknown 35.4
Red nucleus
nTPM: 45.2
2823 Male, age 76, right hemisphere 48.7
1954 Female, age 42, unknown 48.6
1865 Male, age 51, unknown 48.4
2503 Female, age 72, unknown 48.0
2769 Male, age 72, unknown 47.4
2227 Male, age 72, unknown 46.9
2588 Male, age 74, left hemisphere 46.2
1904 Male, age 53, unknown 46.1
2785 Male, age 18, unknown 43.0
1821 Female, age 72, unknown 41.3
2725 Female, age 75, unknown 40.7
2584 Male, age 75, left hemisphere 36.9
Substantia nigra
nTPM: 33.8
2583 Male, age 75, right hemisphere 40.3
1889 Female, age 72, unknown 38.4
2665 Male, age 74, both hemispheres 35.8
2590 Female, age 75, unknown 35.3
1916 Female, age 42, unknown 33.1
2699 Male, age 18, unknown 33.1
1851 Male, age 51, unknown 32.5
2409 Female, age 72, unknown 31.9
1941 Male, age 53, unknown 29.0
2241 Male, age 72, unknown 28.9
Superior colliculus
nTPM: 42.0
1895 Male, age 76, right hemisphere 47.1
2261 Male, age 18, unknown 47.1
1995 Male, age 72, unknown 46.5
2087 Female, age 72, unknown 41.9
1796 Male, age 53, unknown 41.4
1839 Male, age 51, unknown 41.3
1913 Female, age 42, unknown 41.3
2664 Male, age 75, both hemispheres 38.9
2668 Female, age 75, unknown 38.3
2587 Male, age 74, left hemisphere 35.8
Ventral tegmental area
nTPM: 35.0
2223 Female, age 72, unknown 39.0
2410 Female, age 72, unknown 37.4
1942 Male, age 51, unknown 34.0
2218 Male, age 76, both hemispheres 33.7
2021 Male, age 53, unknown 33.4
1915 Female, age 42, unknown 32.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.6
Samples: 183

Max nTPM: 21.8
Min nTPM: 3.7
Std nTPM: 2.9
Median nTPM: 10.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 21.8
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 21.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 18.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 17.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 17.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 17.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 16.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 16.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.2
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 15.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 15.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.6
Samples: 4

Max nTPM: 50.7
Min nTPM: 21.8
Sample A Female 29.1
Sample B Female 21.8
Sample C Male 36.7
Sample D Male 50.7
Midbrain
nTPM: 35.1
Samples: 4

Max nTPM: 42.8
Min nTPM: 21.1
Sample A Female 42.8
Sample B Female 21.1
Sample C Male 42.3
Sample D Male 34.0
Periaqueductal gray
nTPM: 33.0
Samples: 3

Max nTPM: 40.1
Min nTPM: 21.7
Sample B Female 21.7
Sample C Male 40.1
Sample D Male 37.2
Superior colliculi
nTPM: 31.3
Samples: 4

Max nTPM: 42.3
Min nTPM: 18.7
Sample A Female 29.7
Sample B Female 18.7
Sample C Male 34.6
Sample D Male 42.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 7.8
Min nTPM: 7.0
Sample A Male 7.2
Sample B Male 7.0
Sample C Female 7.8
Sample D Female 7.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75084530 Antisense, RP_060412_04_C11, Mouse strain C57BL/6J (56 days, male) 0.5
69782981 Antisense, RP_050505_04_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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