MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.9 nTPM
HPA Brain:56.7 nTPM
GTEx:27.9 nTPM
FANTOM5:33.1 Scaled Tags Per Million
Pig:64.3 nTPM
Mouse:154.6 nTPM
Allen mouse:4.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.5
2219 Male, age 76, both hemispheres 61.8
2411 Female, age 72, unknown 54.2
1827 Male, age 72, unknown 53.6
2019 Male, age 18, unknown 51.6
2586 Male, age 75, left hemisphere 46.3
1833 Male, age 53, unknown 46.2
2666 Male, age 74, left hemisphere 46.1
1870 Female, age 42, unknown 45.3
1830 Male, age 51, unknown 43.4
2828 Female, age 72, unknown 36.0
Dorsal raphe nucleus
nTPM: 48.7
2298 Female, age 72, unknown 56.4
2047 Male, age 72, unknown 50.4
2750 Male, age 76, both hemispheres 50.3
1828 Male, age 53, unknown 49.7
2016 Female, age 72, unknown 36.6
Inferior colliculus
nTPM: 52.2
2097 Female, age 72, unknown 59.7
1848 Female, age 42, unknown 51.5
1890 Male, age 53, unknown 49.7
2849 Male, age 72, unknown 48.1
Median raphe nucleus
nTPM: 55.0
2220 Male, age 76, midline 55.0
Periaquaductal grey, anterior
nTPM: 51.5
1947 Male, age 18, unknown 56.0
2502 Female, age 75, unknown 53.2
1795 Male, age 51, unknown 45.4
Periaquaductal grey, dorsal
nTPM: 42.3
1840 Male, age 53, unknown 50.1
2464 Female, age 72, unknown 40.8
1831 Male, age 72, unknown 40.3
2850 Male, age 76, both hemispheres 38.0
Periaquaductal grey, lateral
nTPM: 40.2
2272 Male, age 74, both hemispheres 45.7
2053 Male, age 18, unknown 39.8
2140 Male, age 76, both hemispheres 35.0
Pretectal area
nTPM: 52.7
1816 Male, age 51, unknown 72.7
1944 Female, age 72, unknown 71.0
2007 Male, age 72, unknown 65.9
1817 Female, age 42, unknown 58.9
1815 Male, age 53, unknown 50.5
2224 Female, age 72, unknown 48.8
2825 Male, age 18, unknown 45.7
2273 Male, age 74, both hemispheres 42.6
2407 Male, age 75, both hemispheres 42.2
2667 Female, age 75, unknown 41.6
2316 Male, age 76, right hemisphere 39.2
Red nucleus
nTPM: 41.3
1821 Female, age 72, unknown 48.6
2785 Male, age 18, unknown 48.3
2584 Male, age 75, left hemisphere 46.5
2725 Female, age 75, unknown 46.3
2588 Male, age 74, left hemisphere 45.0
2227 Male, age 72, unknown 40.1
1954 Female, age 42, unknown 39.0
2769 Male, age 72, unknown 38.6
2823 Male, age 76, right hemisphere 37.0
1865 Male, age 51, unknown 36.8
1904 Male, age 53, unknown 36.4
2503 Female, age 72, unknown 32.4
Substantia nigra
nTPM: 56.7
1941 Male, age 53, unknown 69.8
1916 Female, age 42, unknown 67.1
2241 Male, age 72, unknown 65.3
1889 Female, age 72, unknown 60.8
2665 Male, age 74, both hemispheres 57.4
1851 Male, age 51, unknown 56.3
2409 Female, age 72, unknown 54.1
2583 Male, age 75, right hemisphere 47.4
2590 Female, age 75, unknown 46.4
2699 Male, age 18, unknown 42.2
Superior colliculus
nTPM: 47.7
2087 Female, age 72, unknown 60.5
2668 Female, age 75, unknown 59.7
2261 Male, age 18, unknown 50.8
1895 Male, age 76, right hemisphere 49.9
1839 Male, age 51, unknown 48.8
1796 Male, age 53, unknown 47.4
2587 Male, age 74, left hemisphere 46.8
2664 Male, age 75, both hemispheres 41.6
1913 Female, age 42, unknown 38.3
1995 Male, age 72, unknown 32.8
Ventral tegmental area
nTPM: 48.6
2410 Female, age 72, unknown 57.9
2218 Male, age 76, both hemispheres 52.0
1915 Female, age 42, unknown 50.4
2223 Female, age 72, unknown 47.2
1942 Male, age 51, unknown 45.2
2021 Male, age 53, unknown 38.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.9
Samples: 183

Max nTPM: 90.2
Min nTPM: 8.9
Std nTPM: 12.8
Median nTPM: 24.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 73.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 68.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 67.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 65.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 58.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 55.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 55.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 52.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 52.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 52.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.1
FF:10158-103A5 76 years, female 33.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.6
Samples: 4

Max nTPM: 74.0
Min nTPM: 42.2
Sample A Female 74.0
Sample B Female 47.2
Sample C Male 71.1
Sample D Male 42.2
Midbrain
nTPM: 64.3
Samples: 4

Max nTPM: 74.2
Min nTPM: 49.6
Sample A Female 49.6
Sample B Female 63.7
Sample C Male 74.2
Sample D Male 69.8
Periaqueductal gray
nTPM: 56.3
Samples: 3

Max nTPM: 67.8
Min nTPM: 50.2
Sample B Female 50.2
Sample C Male 67.8
Sample D Male 50.9
Superior colliculi
nTPM: 60.4
Samples: 4

Max nTPM: 77.3
Min nTPM: 38.2
Sample A Female 65.4
Sample B Female 38.2
Sample C Male 77.3
Sample D Male 60.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 154.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 154.7
Samples: 4

Max nTPM: 169.4
Min nTPM: 139.1
Sample A Male 139.1
Sample B Male 163.7
Sample C Female 169.4
Sample D Female 146.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
68563000 Antisense, RP_050120_02_H07, Mouse strain C57BL/6J (56 days, male) 4.8

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