MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.9 nTPM
HPA Brain:64.1 nTPM
GTEx:46.9 nTPM
FANTOM5:60.3 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.2
2828 Female, age 72, unknown 62.5
2586 Male, age 75, left hemisphere 59.0
2411 Female, age 72, unknown 54.6
1870 Female, age 42, unknown 49.1
1827 Male, age 72, unknown 48.1
2666 Male, age 74, left hemisphere 46.8
2219 Male, age 76, both hemispheres 44.7
1833 Male, age 53, unknown 44.3
1830 Male, age 51, unknown 43.7
2019 Male, age 18, unknown 39.6
Dorsal raphe nucleus
nTPM: 64.1
2298 Female, age 72, unknown 79.3
2016 Female, age 72, unknown 69.8
2047 Male, age 72, unknown 63.5
1828 Male, age 53, unknown 57.4
2750 Male, age 76, both hemispheres 50.6
Inferior colliculus
nTPM: 47.8
2097 Female, age 72, unknown 51.1
1890 Male, age 53, unknown 48.6
1848 Female, age 42, unknown 47.6
2849 Male, age 72, unknown 44.0
Median raphe nucleus
nTPM: 46.2
2220 Male, age 76, midline 46.2
Periaquaductal grey, anterior
nTPM: 56.3
1795 Male, age 51, unknown 60.1
2502 Female, age 75, unknown 54.9
1947 Male, age 18, unknown 53.9
Periaquaductal grey, dorsal
nTPM: 53.5
1840 Male, age 53, unknown 59.6
2464 Female, age 72, unknown 54.5
2850 Male, age 76, both hemispheres 53.9
1831 Male, age 72, unknown 46.1
Periaquaductal grey, lateral
nTPM: 57.9
2272 Male, age 74, both hemispheres 64.8
2053 Male, age 18, unknown 56.9
2140 Male, age 76, both hemispheres 52.1
Pretectal area
nTPM: 48.4
2273 Male, age 74, both hemispheres 65.4
2224 Female, age 72, unknown 63.3
2825 Male, age 18, unknown 56.1
2667 Female, age 75, unknown 50.8
2316 Male, age 76, right hemisphere 48.4
1944 Female, age 72, unknown 43.0
1815 Male, age 53, unknown 42.4
1817 Female, age 42, unknown 41.2
2407 Male, age 75, both hemispheres 40.9
2007 Male, age 72, unknown 40.8
1816 Male, age 51, unknown 40.3
Red nucleus
nTPM: 48.6
2503 Female, age 72, unknown 56.9
2227 Male, age 72, unknown 55.7
2769 Male, age 72, unknown 54.9
2725 Female, age 75, unknown 54.7
1904 Male, age 53, unknown 50.6
1865 Male, age 51, unknown 47.8
1821 Female, age 72, unknown 47.2
1954 Female, age 42, unknown 46.3
2823 Male, age 76, right hemisphere 44.2
2584 Male, age 75, left hemisphere 43.4
2785 Male, age 18, unknown 42.2
2588 Male, age 74, left hemisphere 39.8
Substantia nigra
nTPM: 52.6
1851 Male, age 51, unknown 64.9
2699 Male, age 18, unknown 64.1
1916 Female, age 42, unknown 59.7
1941 Male, age 53, unknown 51.8
2590 Female, age 75, unknown 50.2
2409 Female, age 72, unknown 49.5
2583 Male, age 75, right hemisphere 49.0
2241 Male, age 72, unknown 48.2
1889 Female, age 72, unknown 44.8
2665 Male, age 74, both hemispheres 43.8
Superior colliculus
nTPM: 47.6
1995 Male, age 72, unknown 57.8
1796 Male, age 53, unknown 53.4
1913 Female, age 42, unknown 51.7
2587 Male, age 74, left hemisphere 49.3
2261 Male, age 18, unknown 48.8
2664 Male, age 75, both hemispheres 46.4
1839 Male, age 51, unknown 45.8
2087 Female, age 72, unknown 43.2
2668 Female, age 75, unknown 41.7
1895 Male, age 76, right hemisphere 37.8
Ventral tegmental area
nTPM: 56.5
1915 Female, age 42, unknown 62.5
1942 Male, age 51, unknown 58.3
2021 Male, age 53, unknown 57.7
2410 Female, age 72, unknown 57.4
2218 Male, age 76, both hemispheres 52.4
2223 Female, age 72, unknown 50.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.9
Samples: 183

Max nTPM: 111.6
Min nTPM: 17.8
Std nTPM: 15.4
Median nTPM: 44.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 111.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 93.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 89.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 85.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 82.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 80.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 78.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 77.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 76.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 75.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 74.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.3
FF:10158-103A5 76 years, female 60.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo