MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.0 nTPM
HPA Brain:32.0 nTPM
GTEx:46.0 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:72.6 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2586 Male, age 75, left hemisphere 35.2
2828 Female, age 72, unknown 29.7
2219 Male, age 76, both hemispheres 29.6
1827 Male, age 72, unknown 28.9
2411 Female, age 72, unknown 28.7
1870 Female, age 42, unknown 28.3
1830 Male, age 51, unknown 26.7
2666 Male, age 74, left hemisphere 25.8
1833 Male, age 53, unknown 25.6
2019 Male, age 18, unknown 22.8
Dorsal raphe nucleus
nTPM: 26.4
1828 Male, age 53, unknown 28.9
2016 Female, age 72, unknown 27.0
2750 Male, age 76, both hemispheres 27.0
2047 Male, age 72, unknown 25.8
2298 Female, age 72, unknown 23.2
Inferior colliculus
nTPM: 27.5
2849 Male, age 72, unknown 28.6
1890 Male, age 53, unknown 28.0
1848 Female, age 42, unknown 26.9
2097 Female, age 72, unknown 26.5
Median raphe nucleus
nTPM: 30.6
2220 Male, age 76, midline 30.6
Periaquaductal grey, anterior
nTPM: 29.6
2502 Female, age 75, unknown 30.6
1947 Male, age 18, unknown 30.5
1795 Male, age 51, unknown 27.8
Periaquaductal grey, dorsal
nTPM: 24.7
1840 Male, age 53, unknown 26.7
2464 Female, age 72, unknown 24.6
1831 Male, age 72, unknown 23.9
2850 Male, age 76, both hemispheres 23.7
Periaquaductal grey, lateral
nTPM: 26.8
2272 Male, age 74, both hemispheres 27.8
2053 Male, age 18, unknown 26.8
2140 Male, age 76, both hemispheres 25.7
Pretectal area
nTPM: 26.4
2407 Male, age 75, both hemispheres 30.0
2667 Female, age 75, unknown 29.3
2007 Male, age 72, unknown 27.8
2273 Male, age 74, both hemispheres 27.8
2825 Male, age 18, unknown 27.4
1944 Female, age 72, unknown 26.5
1816 Male, age 51, unknown 26.1
2224 Female, age 72, unknown 25.5
1817 Female, age 42, unknown 25.4
2316 Male, age 76, right hemisphere 23.2
1815 Male, age 53, unknown 21.7
Red nucleus
nTPM: 29.6
2584 Male, age 75, left hemisphere 33.5
1865 Male, age 51, unknown 32.0
2227 Male, age 72, unknown 31.7
2588 Male, age 74, left hemisphere 31.4
2503 Female, age 72, unknown 30.7
1821 Female, age 72, unknown 29.8
2769 Male, age 72, unknown 29.5
1904 Male, age 53, unknown 28.1
2785 Male, age 18, unknown 28.1
2725 Female, age 75, unknown 27.2
2823 Male, age 76, right hemisphere 26.8
1954 Female, age 42, unknown 26.5
Substantia nigra
nTPM: 32.0
1916 Female, age 42, unknown 39.3
1851 Male, age 51, unknown 37.8
2699 Male, age 18, unknown 35.0
1941 Male, age 53, unknown 32.9
2583 Male, age 75, right hemisphere 31.3
2665 Male, age 74, both hemispheres 31.1
2241 Male, age 72, unknown 30.4
2409 Female, age 72, unknown 28.4
2590 Female, age 75, unknown 27.5
1889 Female, age 72, unknown 25.9
Superior colliculus
nTPM: 27.7
2261 Male, age 18, unknown 30.0
2668 Female, age 75, unknown 30.0
1796 Male, age 53, unknown 29.9
2664 Male, age 75, both hemispheres 28.7
1913 Female, age 42, unknown 28.4
2587 Male, age 74, left hemisphere 27.6
1895 Male, age 76, right hemisphere 26.1
2087 Female, age 72, unknown 25.7
1839 Male, age 51, unknown 25.6
1995 Male, age 72, unknown 24.9
Ventral tegmental area
nTPM: 29.7
1915 Female, age 42, unknown 35.6
2223 Female, age 72, unknown 30.8
2021 Male, age 53, unknown 30.1
2218 Male, age 76, both hemispheres 28.9
1942 Male, age 51, unknown 27.8
2410 Female, age 72, unknown 24.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.0
Samples: 183

Max nTPM: 104.7
Min nTPM: 20.7
Std nTPM: 11.3
Median nTPM: 45.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 104.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 82.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 72.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 72.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 70.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 68.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 68.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 68.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 66.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 64.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 62.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.1
FF:10158-103A5 76 years, female 30.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.0
Samples: 4

Max nTPM: 36.5
Min nTPM: 23.4
Sample A Female 36.5
Sample B Female 23.4
Sample C Male 26.7
Sample D Male 25.5
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 44.7
Min nTPM: 20.2
Sample A Female 44.7
Sample B Female 32.0
Sample C Male 20.2
Sample D Male 21.6
Periaqueductal gray
nTPM: 24.8
Samples: 3

Max nTPM: 26.6
Min nTPM: 21.8
Sample B Female 26.6
Sample C Male 26.1
Sample D Male 21.8
Superior colliculi
nTPM: 26.1
Samples: 4

Max nTPM: 29.4
Min nTPM: 22.0
Sample A Female 29.4
Sample B Female 27.7
Sample C Male 25.4
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 72.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.6
Samples: 4

Max nTPM: 80.6
Min nTPM: 63.6
Sample A Male 80.6
Sample B Male 68.0
Sample C Female 63.6
Sample D Female 78.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68546242 Antisense, RP_050120_02_C02, Mouse strain C57BL/6J (56 days, male) 0.8

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