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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
33.7
Sample id
Sample description
nTPM
Amygdala nTPM: 30.5
2695
Female, age 67, right hemisphere
33.2
1987
Female, age 91, left hemisphere
31.0
2814
Male, age 76, right hemisphere
30.6
2514
Male, age 75, right hemisphere
29.5
2517
Female, age 94, left hemisphere
28.3
Basal amygdala nTPM: 33.7
2827
Female, age 67, right hemisphere
40.1
2685
Female, age 94, left hemisphere
36.3
2243
Female, age 91, right hemisphere
33.2
2609
Male, age 75, right hemisphere
32.1
1955
Male, age 76, both hemispheres
31.0
2110
Male, age 80, left hemisphere
29.6
Central amygdala nTPM: 30.9
2701
Female, age 91, right hemisphere
37.0
2239
Male, age 80, left hemisphere
31.9
2515
Male, age 75, right hemisphere
30.2
1905
Male, age 76, both hemispheres
28.0
2826
Female, age 94, left hemisphere
27.5
Corticomedial amygdala nTPM: 31.8
2535
Female, age 67, right hemisphere
38.7
2240
Male, age 76, both hemispheres
33.0
2429
Female, age 94, left hemisphere
31.1
2428
Male, age 75, right hemisphere
30.0
2242
Female, age 91, right hemisphere
29.7
2829
Male, age 80, left hemisphere
28.0
Lateral amygdala nTPM: 31.7
2255
Female, age 91, right hemisphere
36.9
2830
Female, age 67, right hemisphere
36.4
2256
Male, age 80, left hemisphere
32.7
2516
Male, age 75, right hemisphere
29.4
2534
Female, age 94, left hemisphere
28.9
1883
Male, age 76, both hemispheres
25.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 6.9
Samples: 181
Max nTPM: 18.3
Min nTPM: 1.5
Std nTPM: 2.5
Median nTPM: 6.8
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
18.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
17.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
15.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
13.0
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
12.4
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
11.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
11.0
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
10.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
10.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
10.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
10.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
10.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
10.0
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
10.0
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
10.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
9.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
9.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
9.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
9.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
9.3
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
9.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
9.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
9.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
9.1
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
9.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
9.0
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
9.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
8.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
8.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
8.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
8.9
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
8.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
8.9
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
8.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
8.9
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
8.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
8.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
8.6
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
8.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
8.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
8.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
8.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
8.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
8.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
8.3
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
8.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
8.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
8.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
8.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
8.1
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
8.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
8.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
8.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
8.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
7.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
7.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
7.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
7.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
7.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
7.8
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
7.8
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
7.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
7.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
7.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
7.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
7.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
7.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
7.5
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
7.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
7.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
7.4
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
7.4
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
7.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
7.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
7.4
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
7.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
7.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
7.3
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
7.2
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
7.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
7.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
7.1
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
7.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
7.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
7.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
7.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
7.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
7.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
6.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
6.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
6.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
6.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
6.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
6.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
6.7
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
6.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
6.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
6.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
6.5
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
6.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
6.4
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
6.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
6.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
6.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
6.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
6.3
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
6.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
6.2
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
6.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
6.2
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
6.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
6.1
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
6.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
6.0
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
6.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
6.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
6.0
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
5.9
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
5.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
5.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
5.9
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
5.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
5.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
5.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
5.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
5.6
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
5.6
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
5.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
5.6
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
5.5
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
5.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
5.5
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
5.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
5.4
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
5.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
5.3
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
5.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
5.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
5.2
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
5.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
5.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
5.1
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
5.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
5.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
5.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
4.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
4.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
4.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
4.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
4.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
4.6
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
4.5
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
4.5
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
4.5
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
4.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
4.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
4.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
4.3
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
4.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
4.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
4.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
4.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
3.9
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
3.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
3.8
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
3.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
3.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
3.4
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
3.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
3.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
3.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
3.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
2.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
2.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
2.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
2.4
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
2.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
2.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
2.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
2.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
1.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.3
Pig sample
Sample description
nTPM
Amygdala nTPM: 17.3
Samples: 4
Max nTPM: 18.6
Min nTPM: 16.3
Sample A
Female
16.9
Sample B
Female
16.3
Sample C
Male
17.5
Sample D
Male
18.6
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 7.4
Samples: 4
Max nTPM: 7.8
Min nTPM: 6.9
Sample A
Male
7.8
Sample B
Male
7.7
Sample C
Female
6.9
Sample D
Female
7.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
