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MCOLN3
HPA
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  • MCOLN3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

MCOLN3
Synonyms FLJ11006, TRP-ML3, TRPML3
Gene descriptioni

Full gene name according to HGNC.

Mucolipin TRP cation channel 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Transporters
Voltage-gated ion channels
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband p22.3
Chromosome location (bp) 85018082 - 85048500
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000055732 (version 109)
Entrez gene 55283
HGNC HGNC:13358
UniProt Q8TDD5
GeneCards MCOLN3
Antibodypedia MCOLN3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Nonselective cation channel probably playing a role in the regulation of membrane trafficking events. Acts as a Ca(2+)-permeable cation channel with inwardly rectifying activity 1, 2, 3, 4, 5. Mediates release of Ca(2+) from endosomes to the cytoplasm, contributes to endosomal acidification and is involved in the regulation of membrane trafficking and fusion in the endosomal pathway 6. Also permeable to Mg(2+), Na(+) and K(+) (By similarity). Does not seem to act as mechanosensory transduction channel in inner ear sensory hair cells. Proposed to play a critical role at the cochlear stereocilia ankle-link region during hair-bundle growth (By similarity). Involved in the regulation of autophagy 7. Through association with GABARAPL2 may be involved in autophagosome formation possibly providing Ca(2+) for the fusion process (By similarity). Through a possible and probably tissue-specific heteromerization with MCOLN1 may be at least in part involved in many lysosome-dependent cellular events 8. Possible heteromeric ion channel assemblies with TRPV5 show pharmacological similarity with TRPML3 9.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Ion channel
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ion transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Lipid-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes one of members of the mucolipin cation channel proteins. Mutation studies of the highly similar protein in mice have shown that the protein is found in cochlea hair cells, and mutant mice show early-onset hearing loss and balance problems. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
MCOLN3-201
ENSP00000342698
ENST00000341115
Q8TDD5
[Direct mapping] Mucolipin-3
Transporters
   Transporter channels and pores
Voltage-gated ion channels
   Transient Receptor Potential Channels
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   deepTMHMM predicted membrane proteins
Show all
GO:0000421 [autophagosome membrane]
GO:0005261 [cation channel activity]
GO:0005262 [calcium channel activity]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005768 [endosome]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0008289 [lipid binding]
GO:0016020 [membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0031901 [early endosome membrane]
GO:0031902 [late endosome membrane]
GO:0051209 [release of sequestered calcium ion into cytosol]
GO:0070588 [calcium ion transmembrane transport]
GO:0072345 [NAADP-sensitive calcium-release channel activity]
Show all
497 aa
57.7 kDa
No 6
MCOLN3-202
ENSP00000359619
ENST00000370587
B1ANB7
[Direct mapping] Mucolipin 3, isoform CRA_d; Mucolipin-3
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   deepTMHMM predicted membrane proteins
Show all
GO:0005261 [cation channel activity]
GO:0016020 [membrane]
GO:0034220 [ion transmembrane transport]
GO:0098655 [cation transmembrane transport]
321 aa
37.2 kDa
No 2
MCOLN3-203
ENSP00000359621
ENST00000370589
Q8TDD5
[Direct mapping] Mucolipin-3
Transporters
   Transporter channels and pores
Voltage-gated ion channels
   Transient Receptor Potential Channels
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   deepTMHMM predicted membrane proteins
Show all
GO:0000421 [autophagosome membrane]
GO:0005261 [cation channel activity]
GO:0005262 [calcium channel activity]
GO:0005737 [cytoplasm]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005768 [endosome]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0007626 [locomotory behavior]
GO:0008289 [lipid binding]
GO:0016020 [membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0031901 [early endosome membrane]
GO:0031902 [late endosome membrane]
GO:0042491 [inner ear auditory receptor cell differentiation]
GO:0051209 [release of sequestered calcium ion into cytosol]
GO:0070588 [calcium ion transmembrane transport]
GO:0072345 [NAADP-sensitive calcium-release channel activity]
Show all
553 aa
64.2 kDa
No 6

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