HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:22.2 nTPM
HPA Brain:73.5 nTPM
GTEx:22.2 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:57.5 nTPM
Mouse:56.4 nTPM
Allen mouse:9.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030316
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 73.5
Sample id Sample description nTPM
Hippocampus
nTPM: 68.4
1898 Male, age 80, left hemisphere 73.2
1911 Female, age 85, right hemisphere 72.6
2529 Female, age 94, left hemisphere 67.4
2148 Female, age 91, left hemisphere 67.3
1855 Male, age 76, left hemisphere 65.3
2621 Female, age 67, right hemisphere 64.5
Dentate gyrus
nTPM: 68.6
2530 Female, age 94, left hemisphere 72.8
1927 Female, age 91, both hemispheres 71.2
2010 Male, age 76, both hemispheres 70.1
2528 Male, age 74, both hemispheres 68.3
2531 Female, age 67, both hemispheres 67.5
2246 Female, age 85, both hemispheres 61.9
Entorhinal gyrus
nTPM: 69.4
2117 Female, age 91, right hemisphere 75.7
1938 Female, age 85, left hemisphere 74.1
1787 Male, age 76, left hemisphere 69.7
2764 Male, age 80, right hemisphere 69.3
2613 Female, age 94, left hemisphere 64.2
2686 Male, age 75, right hemisphere 63.4
Hippocampus, CA1
nTPM: 73.0
2749 Male, age 80, left hemisphere 93.4
1873 Female, age 85, both hemispheres 70.9
2527 Male, age 74, both hemispheres 69.6
2082 Female, age 91, right hemisphere 67.1
2045 Male, age 76, both hemispheres 64.0
Hippocampus, CA2
nTPM: 70.6
1963 Male, age 80, left hemisphere 84.8
1892 Male, age 76, both hemispheres 74.9
2113 Female, age 91, right hemisphere 71.9
2437 Female, age 94, left hemisphere 65.0
2249 Male, age 74, both hemispheres 63.5
1940 Female, age 85, left hemisphere 63.3
Hippocampus, CA3
nTPM: 70.3
2137 Male, age 80, left hemisphere 86.9
1867 Male, age 76, both hemispheres 74.5
1891 Female, age 85, both hemispheres 72.2
2861 Female, age 67, both hemispheres 65.1
2436 Male, age 74, both hemispheres 62.5
2620 Female, age 94, left hemisphere 60.7
Parahippocampal cortex
nTPM: 67.9
1850 Male, age 80, both hemispheres 77.1
1990 Female, age 91, right hemisphere 73.4
2018 Male, age 76, both hemispheres 73.0
1933 Female, age 85, both hemispheres 70.5
2250 Female, age 67, right hemisphere 70.1
2245 Female, age 91, both hemispheres 67.4
2693 Female, age 94, both hemispheres 65.6
2532 Female, age 72, left hemisphere 65.5
2622 Female, age 67, right hemisphere 58.5
2692 Male, age 74, both hemispheres 57.6
Perirhinal gyrus
nTPM: 73.5
1841 Female, age 85, right hemisphere 79.8
1847 Female, age 91, left hemisphere 74.4
1794 Male, age 80, right hemisphere 72.7
2848 Male, age 76, right hemisphere 72.4
2521 Female, age 94, right hemisphere 68.1
Subiculum
nTPM: 66.4
1977 Female, age 85, both hemispheres 74.6
1901 Male, age 80, both hemispheres 73.6
2729 Female, age 91, right hemisphere 66.0
2042 Male, age 76, both hemispheres 65.0
2438 Female, age 94, left hemisphere 60.5
2619 Male, age 74, both hemispheres 58.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 22.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.2
Samples: 255

Max nTPM: 33.8
Min nTPM: 12.8
Std nTPM: 3.4
Median nTPM: 22.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 33.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 32.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 31.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 30.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 30.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 30.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 29.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 29.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 29.5
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 29.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 28.7
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.6
FF:10169-103B7 60 years, female 28.0
FF:10153-102I9 76 years, female 27.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 57.5
Pig sample Sample description nTPM
Subiculum
nTPM: 52.2
Samples: 4

Max nTPM: 62.0
Min nTPM: 47.8
Sample A Female 62.0
Sample B Female 50.1
Sample C Male 47.8
Sample D Male 48.8
Dorsal hippocampus
nTPM: 54.0
Samples: 4

Max nTPM: 56.3
Min nTPM: 48.6
Sample A Female 56.3
Sample B Female 55.6
Sample C Male 55.3
Sample D Male 48.6
Entorhinal cortex
nTPM: 57.5
Samples: 4

Max nTPM: 62.7
Min nTPM: 49.7
Sample A Female 55.0
Sample B Female 62.7
Sample C Male 62.7
Sample D Male 49.7
Ventral hippocampus
nTPM: 50.1
Samples: 4

Max nTPM: 51.5
Min nTPM: 46.7
Sample A Female 50.8
Sample B Female 51.4
Sample C Male 46.7
Sample D Male 51.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 56.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.5
Samples: 4

Max nTPM: 59.3
Min nTPM: 52.4
Sample A Male 59.3
Sample B Male 52.4
Sample C Female 59.2
Sample D Female 54.9
Hippocampal formation
nTPM: 55.4
Samples: 4

Max nTPM: 63.0
Min nTPM: 47.8
Sample A Male 63.0
Sample B Male 54.5
Sample C Female 56.4
Sample D Female 47.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 9.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.1
68845514 Antisense, RP_050224_01_H11, Mouse strain C57BL/6J (56 days, male) 9.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo