MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.4 nTPM
HPA Brain:37.7 nTPM
GTEx:12.4 nTPM
FANTOM5:16.4 Scaled Tags Per Million
Pig:9.2 nTPM
Mouse:1.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.5
2586 Male, age 75, left hemisphere 33.0
2828 Female, age 72, unknown 30.3
1833 Male, age 53, unknown 29.0
1830 Male, age 51, unknown 27.3
1827 Male, age 72, unknown 25.2
2666 Male, age 74, left hemisphere 23.0
1870 Female, age 42, unknown 22.8
2411 Female, age 72, unknown 22.4
2019 Male, age 18, unknown 21.8
2219 Male, age 76, both hemispheres 20.5
Dorsal raphe nucleus
nTPM: 28.2
2047 Male, age 72, unknown 34.4
2016 Female, age 72, unknown 30.1
1828 Male, age 53, unknown 27.6
2750 Male, age 76, both hemispheres 24.6
2298 Female, age 72, unknown 24.5
Inferior colliculus
nTPM: 26.3
2849 Male, age 72, unknown 30.7
1848 Female, age 42, unknown 28.2
1890 Male, age 53, unknown 24.4
2097 Female, age 72, unknown 21.8
Median raphe nucleus
nTPM: 37.2
2220 Male, age 76, midline 37.2
Periaquaductal grey, anterior
nTPM: 24.3
1947 Male, age 18, unknown 26.3
1795 Male, age 51, unknown 24.9
2502 Female, age 75, unknown 21.7
Periaquaductal grey, dorsal
nTPM: 33.0
2850 Male, age 76, both hemispheres 52.0
1831 Male, age 72, unknown 28.3
2464 Female, age 72, unknown 27.0
1840 Male, age 53, unknown 24.7
Periaquaductal grey, lateral
nTPM: 37.7
2140 Male, age 76, both hemispheres 51.0
2053 Male, age 18, unknown 33.3
2272 Male, age 74, both hemispheres 28.9
Pretectal area
nTPM: 28.0
2316 Male, age 76, right hemisphere 37.6
2407 Male, age 75, both hemispheres 33.2
2273 Male, age 74, both hemispheres 31.1
2667 Female, age 75, unknown 30.4
2224 Female, age 72, unknown 30.3
2825 Male, age 18, unknown 27.3
1944 Female, age 72, unknown 26.6
1815 Male, age 53, unknown 25.5
1816 Male, age 51, unknown 24.0
1817 Female, age 42, unknown 21.6
2007 Male, age 72, unknown 20.5
Red nucleus
nTPM: 24.3
1954 Female, age 42, unknown 28.1
2823 Male, age 76, right hemisphere 28.0
2769 Male, age 72, unknown 26.0
2227 Male, age 72, unknown 24.3
2503 Female, age 72, unknown 24.3
2588 Male, age 74, left hemisphere 23.7
1904 Male, age 53, unknown 23.6
2725 Female, age 75, unknown 23.6
1865 Male, age 51, unknown 23.3
1821 Female, age 72, unknown 23.2
2584 Male, age 75, left hemisphere 23.0
2785 Male, age 18, unknown 20.6
Substantia nigra
nTPM: 25.1
2699 Male, age 18, unknown 34.0
2583 Male, age 75, right hemisphere 27.5
1941 Male, age 53, unknown 26.7
1851 Male, age 51, unknown 26.6
2590 Female, age 75, unknown 26.1
2665 Male, age 74, both hemispheres 24.9
2241 Male, age 72, unknown 23.3
1916 Female, age 42, unknown 23.2
1889 Female, age 72, unknown 20.0
2409 Female, age 72, unknown 18.8
Superior colliculus
nTPM: 26.6
2664 Male, age 75, both hemispheres 31.9
1796 Male, age 53, unknown 28.5
2087 Female, age 72, unknown 27.5
2261 Male, age 18, unknown 27.0
1995 Male, age 72, unknown 26.9
2668 Female, age 75, unknown 26.1
1839 Male, age 51, unknown 25.1
1895 Male, age 76, right hemisphere 24.8
2587 Male, age 74, left hemisphere 24.7
1913 Female, age 42, unknown 23.2
Ventral tegmental area
nTPM: 26.9
2021 Male, age 53, unknown 30.8
2218 Male, age 76, both hemispheres 30.8
1942 Male, age 51, unknown 28.3
2223 Female, age 72, unknown 26.7
1915 Female, age 42, unknown 25.0
2410 Female, age 72, unknown 20.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.4
Samples: 183

Max nTPM: 46.4
Min nTPM: 1.3
Std nTPM: 7.4
Median nTPM: 10.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 46.4
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 44.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 41.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 33.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 30.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 29.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 28.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 27.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 27.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 26.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 26.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.4
FF:10158-103A5 76 years, female 16.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.7
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.7
Sample A Female 7.9
Sample B Female 10.0
Sample C Male 9.3
Sample D Male 7.7
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.7
Sample A Female 8.1
Sample B Female 9.2
Sample C Male 5.7
Sample D Male 6.5
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 10.5
Min nTPM: 8.3
Sample B Female 10.5
Sample C Male 8.9
Sample D Male 8.3
Superior colliculi
nTPM: 8.6
Samples: 4

Max nTPM: 13.7
Min nTPM: 5.6
Sample A Female 8.5
Sample B Female 13.7
Sample C Male 5.6
Sample D Male 6.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.9
Sample A Male 1.2
Sample B Male 1.4
Sample C Female 1.0
Sample D Female 0.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75931448 Antisense, RP_060601_03_D06, Mouse strain C57BL/6J (56 days, male) 0.1

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