HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.9 nTPM
HPA Brain:37.4 nTPM
GTEx:28.9 nTPM
FANTOM5:118.9 Scaled Tags Per Million
Pig:49.1 nTPM
Mouse:48.4 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 37.4
Sample id Sample description nTPM
Hippocampus
nTPM: 36.3
1898 Male, age 80, left hemisphere 42.4
1855 Male, age 76, left hemisphere 41.6
2621 Female, age 67, right hemisphere 35.7
2529 Female, age 94, left hemisphere 33.9
1911 Female, age 85, right hemisphere 32.2
2148 Female, age 91, left hemisphere 32.0
Dentate gyrus
nTPM: 34.0
2010 Male, age 76, both hemispheres 41.2
2530 Female, age 94, left hemisphere 35.6
2246 Female, age 85, both hemispheres 34.7
2528 Male, age 74, both hemispheres 33.9
1927 Female, age 91, both hemispheres 31.7
2531 Female, age 67, both hemispheres 27.0
Entorhinal gyrus
nTPM: 29.9
2117 Female, age 91, right hemisphere 37.5
1938 Female, age 85, left hemisphere 33.7
1787 Male, age 76, left hemisphere 31.8
2764 Male, age 80, right hemisphere 28.4
2613 Female, age 94, left hemisphere 24.9
2686 Male, age 75, right hemisphere 23.4
Hippocampus, CA1
nTPM: 37.4
2749 Male, age 80, left hemisphere 49.3
2527 Male, age 74, both hemispheres 37.2
2045 Male, age 76, both hemispheres 35.9
1873 Female, age 85, both hemispheres 35.0
2082 Female, age 91, right hemisphere 29.6
Hippocampus, CA2
nTPM: 35.4
2249 Male, age 74, both hemispheres 40.7
1963 Male, age 80, left hemisphere 39.5
1892 Male, age 76, both hemispheres 37.7
2113 Female, age 91, right hemisphere 31.9
2437 Female, age 94, left hemisphere 31.4
1940 Female, age 85, left hemisphere 30.9
Hippocampus, CA3
nTPM: 36.4
2436 Male, age 74, both hemispheres 45.3
1867 Male, age 76, both hemispheres 39.9
2137 Male, age 80, left hemisphere 39.6
2861 Female, age 67, both hemispheres 32.9
1891 Female, age 85, both hemispheres 31.1
2620 Female, age 94, left hemisphere 29.6
Parahippocampal cortex
nTPM: 28.5
2018 Male, age 76, both hemispheres 34.0
1933 Female, age 85, both hemispheres 33.0
2250 Female, age 67, right hemisphere 31.9
1850 Male, age 80, both hemispheres 30.6
2692 Male, age 74, both hemispheres 29.8
2245 Female, age 91, both hemispheres 29.3
1990 Female, age 91, right hemisphere 25.8
2532 Female, age 72, left hemisphere 24.8
2622 Female, age 67, right hemisphere 22.9
2693 Female, age 94, both hemispheres 22.5
Perirhinal gyrus
nTPM: 29.2
1794 Male, age 80, right hemisphere 32.1
1847 Female, age 91, left hemisphere 30.5
2521 Female, age 94, right hemisphere 29.2
1841 Female, age 85, right hemisphere 28.8
2848 Male, age 76, right hemisphere 25.3
Subiculum
nTPM: 32.5
2042 Male, age 76, both hemispheres 37.1
2729 Female, age 91, right hemisphere 33.8
1901 Male, age 80, both hemispheres 32.4
2619 Male, age 74, both hemispheres 31.2
2438 Female, age 94, left hemisphere 30.3
1977 Female, age 85, both hemispheres 30.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 28.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.9
Samples: 255

Max nTPM: 94.3
Min nTPM: 2.9
Std nTPM: 10.8
Median nTPM: 28.6
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 94.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 80.8
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 71.3
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 55.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 53.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 52.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 51.7
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 50.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 49.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 46.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 46.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 118.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 118.9
FF:10169-103B7 60 years, female 126.7
FF:10153-102I9 76 years, female 111.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 49.1
Pig sample Sample description nTPM
Subiculum
nTPM: 47.8
Samples: 4

Max nTPM: 51.5
Min nTPM: 44.9
Sample A Female 51.5
Sample B Female 46.3
Sample C Male 44.9
Sample D Male 48.3
Dorsal hippocampus
nTPM: 49.1
Samples: 4

Max nTPM: 58.5
Min nTPM: 37.0
Sample A Female 58.0
Sample B Female 42.9
Sample C Male 58.5
Sample D Male 37.0
Entorhinal cortex
nTPM: 40.9
Samples: 4

Max nTPM: 47.8
Min nTPM: 33.9
Sample A Female 47.8
Sample B Female 38.7
Sample C Male 43.1
Sample D Male 33.9
Ventral hippocampus
nTPM: 48.4
Samples: 4

Max nTPM: 63.7
Min nTPM: 37.3
Sample A Female 46.0
Sample B Female 37.3
Sample C Male 63.7
Sample D Male 46.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 48.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.4
Samples: 4

Max nTPM: 45.9
Min nTPM: 40.0
Sample A Male 40.0
Sample B Male 41.8
Sample C Female 41.7
Sample D Female 45.9
Hippocampal formation
nTPM: 48.4
Samples: 4

Max nTPM: 55.4
Min nTPM: 42.5
Sample A Male 42.5
Sample B Male 46.8
Sample C Female 55.4
Sample D Female 49.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.7
512530 Antisense, RP_040809_02_B01, Mouse strain C57BL/6J (56 days, male) 8.7

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