We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.4
nTPM
Monaco:
165.3
nTPM
Schmiedel:
592.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.4
HPA sample
nTPM
gdT-cell nTPM: 25.4
Samples: 6
Max nTPM: 39.3
Min nTPM: 16.9
P10809_1007
30.5
P10809_1022
24.1
P10809_1041
39.3
P10809_1060
16.9
P10809_1077
19.2
P10809_1098
22.5
MAIT T-cell nTPM: 20.3
Samples: 6
Max nTPM: 33.2
Min nTPM: 7.7
P10809_1006
33.2
P10809_1024
19.5
P10809_1043
22.1
P10809_1062
19.3
P10809_1083
19.8
P10809_1097
7.7
Memory CD4 T-cell nTPM: 17.0
Samples: 6
Max nTPM: 20.7
Min nTPM: 13.0
P10809_1014
20.4
P10809_1026
15.9
P10809_1045
13.0
P10809_1064
20.7
P10809_1086
17.6
P10809_1113
14.3
Memory CD8 T-cell nTPM: 19.5
Samples: 5
Max nTPM: 27.2
Min nTPM: 11.1
P10809_1012
27.2
P10809_1027
15.4
P10809_1046
23.0
P10809_1065
20.9
P10809_1111
11.1
Naive CD4 T-cell nTPM: 10.9
Samples: 6
Max nTPM: 15.4
Min nTPM: 7.8
P10809_1015
15.4
P10809_1030
12.2
P10809_1049
11.0
P10809_1068
10.5
P10809_1085
8.5
P10809_1112
7.8
Naive CD8 T-cell nTPM: 14.8
Samples: 6
Max nTPM: 22.8
Min nTPM: 4.9
P10809_1016
12.0
P10809_1031
13.0
P10809_1050
16.5
P10809_1069
22.8
P10809_1087
19.7
P10809_1110
4.9
T-reg nTPM: 25.0
Samples: 6
Max nTPM: 40.2
Min nTPM: 6.6
P10809_1018
28.3
P10809_1037
28.5
P10809_1056
40.2
P10809_1075
18.7
P10809_1094
27.6
P10809_1106
6.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
165.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 137.6
Samples: 4
Max nTPM: 176.9
Min nTPM: 115.1
RHH5202_R3573
176.9
RHH5230_R3602
126.3
RHH5259_R3631
115.1
RHH5288_R3660
132.2
Effector memory CD8 T-cell nTPM: 111.4
Samples: 4
Max nTPM: 154.9
Min nTPM: 84.9
RHH5203_R3574
154.9
RHH5231_R3603
90.4
RHH5260_R3632
115.3
RHH5289_R3661
84.9
MAIT T-cell nTPM: 131.6
Samples: 4
Max nTPM: 233.1
Min nTPM: 68.7
RHH5233_R3605
134.7
RHH5205_R3576
233.1
RHH5262_R3634
89.7
RHH5297_R3663
68.7
Memory CD4 T-cell TFH nTPM: 141.5
Samples: 4
Max nTPM: 232.4
Min nTPM: 97.8
RHH5300_R3666
97.8
RHH5236_R3608
124.2
RHH5265_R3637
111.7
RHH5208_R3579
232.4
Memory CD4 T-cell Th1 nTPM: 112.4
Samples: 4
Max nTPM: 138.7
Min nTPM: 80.5
RHH5210_R3581
138.7
RHH5302_R3668
80.5
RHH5238_R3610
119.6
RHH5267_R3639
110.9
Memory CD4 T-cell Th1/Th17 nTPM: 111.2
Samples: 4
Max nTPM: 172.8
Min nTPM: 77.8
RHH5303_R3669
77.8
RHH5211_R3582
172.8
RHH5239_R3611
111.3
RHH5268_R3640
82.7
Memory CD4 T-cell Th17 nTPM: 165.3
Samples: 4
Max nTPM: 234.3
Min nTPM: 108.8
RHH5304_R3670
108.8
RHH5212_R3583
234.3
RHH5240_R3612
196.3
RHH5269_R3641
121.6
Memory CD4 T-cell Th2 nTPM: 158.9
Samples: 4
Max nTPM: 234.0
Min nTPM: 129.4
RHH5305_R3671
134.6
RHH5213_R3584
234.0
RHH5241_R3613
137.4
RHH5270_R3642
129.4
Naive CD4 T-cell nTPM: 73.1
Samples: 4
Max nTPM: 128.6
Min nTPM: 43.9
RHH5306_R3672
43.9
RHH5214_R3585
128.6
RHH5242_R3614
48.5
RHH5271_R3643
71.5
Naive CD8 T-cell nTPM: 83.7
Samples: 4
Max nTPM: 136.7
Min nTPM: 49.7
RHH5201_R3572
136.7
RHH5229_R3601
93.0
RHH5258_R3630
55.4
RHH5287_R3659
49.7
Non-Vd2 gdTCR nTPM: 124.3
Samples: 4
Max nTPM: 168.7
Min nTPM: 72.0
RHH5235_R3607
125.9
RHH5264_R3636
130.6
RHH5207_R3578
168.7
RHH5299_R3665
72.0
T-reg nTPM: 104.5
Samples: 4
Max nTPM: 150.5
Min nTPM: 74.8
RHH5301_R3667
74.8
RHH5237_R3609
93.3
RHH5266_R3638
99.4
RHH5209_R3580
150.5
Terminal effector memory CD4 T-cell nTPM: 106.1
Samples: 2
Max nTPM: 115.7
Min nTPM: 96.5
RHH5243_R3615
115.7
RHH5272_R3644
96.5
Terminal effector memory CD8 T-cell nTPM: 113.0
Samples: 4
Max nTPM: 142.8
Min nTPM: 87.4
RHH5232_R3604
101.3
RHH5204_R3575
120.4
RHH5261_R3633
142.8
RHH5296_R3662
87.4
Vd2 gdTCR nTPM: 97.7
Samples: 4
Max nTPM: 126.2
Min nTPM: 67.0
RHH5234_R3606
95.8
RHH5206_R3577
126.2
RHH5263_R3635
101.7
RHH5298_R3664
67.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
