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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • SFSWAP
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:21.8 nTPM
FANTOM5:46.3 Scaled Tags Per Million
Pig:18.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA039362Antibody HPA040063
Glial cells HighMedium
Neuronal cells MediumMedium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.8
Samples: 300

Max nTPM: 43.8
Min nTPM: 7.7
Std nTPM: 5.3
Median nTPM: 21.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 43.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 38.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 37.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 36.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 35.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 34.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 34.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 32.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 32.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 32.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 31.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 31.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 31.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 30.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 30.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 30.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 30.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 30.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 30.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 30.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 30.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 30.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 30.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 29.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 29.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 29.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 29.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 29.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 29.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 29.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 29.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 28.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 28.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 28.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 28.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 28.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 28.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 28.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 28.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 28.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 27.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 27.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 27.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 27.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 27.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 27.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 27.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 27.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 27.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 26.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 26.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 26.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 26.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 26.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 26.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 26.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 26.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 26.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 26.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 26.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 26.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 26.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 25.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 25.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 25.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 25.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 25.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 25.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 25.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 25.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 25.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 25.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 25.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 25.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 25.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 25.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 24.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 24.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 24.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 24.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 24.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 24.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 24.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 24.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 24.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 24.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 24.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 24.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 24.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 24.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 24.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 24.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 24.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 24.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 24.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 24.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 24.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 23.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 23.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 23.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 23.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 23.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 23.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 23.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 23.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 23.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 23.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 23.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 23.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 23.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 23.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 23.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 22.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 22.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 22.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 22.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 22.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 22.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 22.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 22.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 22.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 22.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 22.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 22.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 22.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 22.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 22.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 22.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 22.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 22.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 22.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 22.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 22.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 22.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 22.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 22.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 22.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 21.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 21.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 21.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 21.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 21.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 21.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 21.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 21.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 21.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 21.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 21.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 21.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 21.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 21.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 21.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 21.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 21.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 21.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 21.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 21.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 21.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 21.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 21.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 20.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 20.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 20.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 20.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 20.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 20.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 20.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 20.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 20.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 20.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 20.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 20.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 20.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 20.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 20.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 20.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 20.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 20.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 20.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 20.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 19.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 19.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 19.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 19.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 19.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 19.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 19.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 19.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 19.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 19.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 19.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 19.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 19.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 19.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 19.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 19.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 19.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 19.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 19.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 19.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 19.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 19.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 19.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 19.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 18.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 18.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 18.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 18.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 18.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 18.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 18.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 18.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 18.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 18.8
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 18.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 18.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 18.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 18.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 18.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 18.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 18.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 18.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 18.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 18.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 18.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 18.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 18.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 18.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 18.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 18.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 17.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 17.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 17.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 17.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 17.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 17.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 17.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 17.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 17.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 17.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 17.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 17.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 17.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 17.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 17.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 17.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 17.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 17.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 17.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 17.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 17.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 17.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 17.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 17.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 16.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 16.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 16.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 16.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 16.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 16.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 16.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 16.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 16.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 16.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 16.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 16.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 16.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 16.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 16.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 16.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 16.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 15.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 15.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 15.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 15.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 15.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 15.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 14.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 14.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 14.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 14.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 14.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 14.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 14.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 14.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 14.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 14.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 14.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 13.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 13.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 13.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 12.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 12.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 11.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 10.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 10.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 9.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 8.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 7.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 7.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.3
FF:10164-103B2 76 years, female 46.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.4
Pig sample Sample description nTPM
Caudate
nTPM: 18.4
Samples: 4

Max nTPM: 20.2
Min nTPM: 16.9
Sample A Female 16.9
Sample B Female 17.9
Sample C Male 18.5
Sample D Male 20.2

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